
genewise output
Score 158.92 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000113_1.0    5 LSPPSLLLLLAALVAPATSTTNYRPDWNRLRGLARGRVE           
                     L PP LLLLLAAL A ATST  ++PDWNRLRGLAR RVE           
                     LLPPLLLLLLAALSASATST--FQPDWNRLRGLARARVE           
gi|408541652|g-52889 cccccctcccggctgtgaaa  tccgtacccgcgcgcgg           
                     ttccttttttcctcccccgc  tacagagtggtcgcgta           
                     gggtggggtcggtaccccca  cgccgctgccgtgcgag           


SPP00000113_1.0   44                        TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
gi|408541652|g-52778 GTGAGCG  Intron 1   CAGatggtccaccag               
                     <0-----[52778:51540]-0>cggggatagtaa               
                                            ctgaaggccggg               


SPP00000113_1.0   56                        VKAFVTEDIQL                
                                            VKAFVT+DI L                
                                            VKAFVTQDIPL                
gi|408541652|g-51503 GTGAGTT  Intron 2   CAGgagtgacgact                
                     <0-----[51503:51165]-0>tacttcaatct                
                                            ggccccgtcta                


SPP00000113_1.0   67                           HNLVMKHLPGADPELVLLSRNYQ 
                                               HNLVMKHLPGADPELVLL + Y+ 
                                Y:Y[tat]       HNLVMKHLPGADPELVLLDQRYK 
gi|408541652|g-51131 TAGTATCCT  Intron 3   CAGTcacgaacccgggcgcgccgccta 
                       <2-----[51129:50370]-2> aatttaatcgcacattttaagaa 
                                               ccgggaccgaccaacgggcaccg 


SPP00000113_1.0   91 ELE                       RIPLSQMTRDEINALVQELGFYR 
                     ELE                       RIPLS+MTR+EINALVQELGFYR 
                     ELE                       RIPLSEMTREEINALVQELGFYR 
gi|408541652|g-50299 gcgGTGAGGC  Intron 4   TAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[50290:50150]-0>gtctgatcgaatacttaatgtag 
                     agg                       cctgcagctagccgggggccccc 


SPP00000113_1.0  117 KSAPEAQVPPEYLWAPAKPPEEASEHD                       
                     K+AP+A VPPEY+ APA+P E A++ D                       
                     KAAPDAPVPPEYMQAPARPAEGAADPD                       
gi|408541652|g-50080 aggcggcgccgtacgcgacggggggcg                       
                     acccacctccaatacccgccagccaca                       
                     gggccgcgccacgggccaaggctacgc                       


//
Making a Y in phase 2 intron
>gi|408541652|gb|JH947280.1|:subseq(1998305,102829).pep
LLPPLLLLLLAALSASATSTFQPDWNRLRGLARARVETCGGXQLNRLKEVKAFVTQDIPL
YHNLVMKHLPGADPELVLLDQRYKELERIPLSEMTREEINALVQELGFYRKAAPDAPVPP
EYMQAPARPAEGAADPD
//
>gi|408541652|gb|JH947280.1|:subseq(1998305,102829).[52889:49998].sp
CTGCTGCCGCCTCTGCTGTTGCTGCTTCTCGCGGCGCTTTCAGCCTCCGCCACCAGCACA
TTCCAGCCCGACTGGAACCGTCTGCGCGGCCTGGCTCGGGCCCGGGTAGAGACCTGTGGG
GGATGACAGCTGAACCGCCTGAAGGAGGTGAAGGCCTTCGTCACCCAGGATATCCCTTTA
TATCACAACCTGGTGATGAAACACCTCCCGGGAGCCGACCCAGAACTCGTGCTGCTGGAC
CAACGCTACAAGGAACTGGAGCGCATCCCTCTGAGCGAAATGACCCGTGAAGAGATCAAC
GCGCTGGTGCAGGAGCTCGGCTTCTACCGCAAGGCGGCGCCCGACGCGCCCGTGCCCCCC
GAATACATGCAGGCGCCCGCCAGACCAGCGGAGGGCGCTGCAGACCCGGAC
//
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	match	52889	50000	159.92	-	.	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	cds	52889	52779	0.00	-	0	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	intron	52778	51540	0.00	-	.	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	cds	51539	51504	0.00	-	0	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	intron	51503	51165	0.00	-	.	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	cds	51164	51130	0.00	-	0	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	intron	51129	50370	0.00	-	.	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	cds	50369	50291	0.00	-	1	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	intron	50290	50150	0.00	-	.	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
gi|408541652|gb|JH947280.1|:subseq(1998305,102829)	GeneWise	cds	50149	50000	0.00	-	0	gi|408541652|gb|JH947280.1|:subseq(1998305,102829)-genewise-prediction-1
//
