
genewise output
Score 873.35 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00001562_2.0    1 MNPESFAAGERRVSPAYVRQGCEARRAHEHLIRLLLEQ            
                     MN ESFAAGER VSPAYVRQGCEARR+HEHLIR LLE+            
                     MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRQLLEK            
gi|408541552|gb50000 aacgatggggccgtcgtgccgtggcctcgccaccccga            
                     tagagtccgagttcccatgaggacggcaaattgattaa            
                     gccgcccgcggggggtcgggctgcgcgcgccaggcggg            


SPP00001562_2.0   39                        GKCPEDGWDESTLELFLHELAVMDSN 
                                            GKCPEDGWDESTLELFLHELAVMDSN 
                                            GKCPEDGWDESTLELFLHELAVMDSN 
gi|408541552|gb50114 GTACGGC  Intron 1   AAGgatcgggtggaacgctccgcggagaa 
                     <0-----[50114:51165]-0>gagcaaggaagctatttaatcttaga 
                                            cgtagttgtgtatactgtatccgccc 


SPP00001562_2.0   65 NFLGNCGVGEREGRVASALVARRHY                         
                     NFLGNCGVGEREGRV S LVARRHY                         
                     NFLGNCGVGEREGRVVSTLVARRHY           R:R[agg]      
gi|408541552|gb51244 atcgatggggaggaggtatggccctAGGTTTGTT  Intron 2      
                     attgaggtgagaggttccttcggaa  <2-----[51321:54257]   
                     tcgctttgaagagaggcgatctctc                         


SPP00001562_2.0   90     FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNVIKLA       
                         FIHGIGRSGDI+AVQPKAAGSSLLNKITNSLVL++IKLA       
                         FIHGIGRSGDIAAVQPKAAGSSLLNKITNSLVLDIIKLA       
gi|408541552|gb54255 TAGGtacgagctggagggccagggtactaaaaattgcgaaatg       
                     -2> ttagtggcgatcctacaccgcgttaatcactttattatc       
                         cttattaatttttaaaatattctgcatgttacgccaggt       


SPP00001562_2.0  130                           VHSVASCFVVPMATGMSLTLCFL 
                                               V++VA+CFVVPMATGMSLTLCFL 
                               G:G[ggt]        VNTVANCFVVPMATGMSLTLCFL 
gi|408541552|gb54376 GGTATGTA  Intron 3   TAGGTgaaggattggcagagaacacttt 
                      <1-----[54377:54662]-1>  tactcagtttctccgtgtctgtt 
                                               ctagccctctagattgtgagcca 


SPP00001562_2.0  154 TLRHKRPKAKYIIWPRIDQKSCFKSMVTA                     
                     TLRHKRPKAKYI+WPRIDQKSCFKSM+TA                     
                     TLRHKRPKAKYILWPRIDQKSCFKSMITA                     
gi|408541552|gb54734 acccaacagatactccagcatttataaag                     
                     ctgaagcacaattgcgtaaacgtacttcc                     
                     cagcgaagaatcagaaacggcctacgcta                     


SPP00001562_2.0  183                           FEPVVIENVLEGDELRTDLKAVE 
                                               FEPVVIENVLEGDELRTDL+AVE 
                               G:G[ggg]        FEPVVIENVLEGDELRTDLQAVE 
gi|408541552|gb54821 GGTAAAAG  Intron 4   TAGGGtgcggagagtggggtcagccggg 
                      <1-----[54822:60172]-1>  tactttaattagaatgcatacta 
                                               tgcggagctaatcggtacgaagg 


SPP00001562_2.0  207 AKIQELGPEHILCLHSTTACFAPRVPD                       
                     AK+QELG + ILC+HSTT+CFAPRVPD                       
                     AKVQELGADQILCVHSTTSCFAPRVPD           R:R[aga]    
gi|408541552|gb60244 gagcgtgggcactgctaatttgcagcgAGGTAAATG  Intron 5    
                     cataatgcaattgtaccccgtccgtca  <2-----[60327:65851] 
                     gacgaggttatgcgtcgactttaagtc                       


SPP00001562_2.0  234     LEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ            
                         LEELAVICANY IPH+VNNAYG+QSSKCMHLIQQ            
                         LEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ            
gi|408541552|gb65849 TAGAtggcggatgatgaccagaagtggcttataccacc            
                     -2> taatcttgcaagtcattaacagtaccagtattaa            
                         aaagtgctttcccgtacctgctagtcgtgtctgg            


SPP00001562_2.0  269                        GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
                                            GARVGRIDAFVQSLDKNFMVPVGGAI 
gi|408541552|gb65955 GTAAGAG  Intron 6   TAGggcggaaggtgcatgaatagcgggga 
                     <0-----[65955:72867]-0>gcgtggtacttagtaaatttctggct 
                                            atattaatcttacgcattgtaatttc 


SPP00001562_2.0  295 IAGFNEPFIQDISKMYP                          RASASP 
                     IAGFNE FIQ+ISKMYP                          RASASP 
                     IAGFNESFIQEISKMYP          G:G[gga]        RASASP 
gi|408541552|gb72946 aggtagttacgaaaatcGGTAAATA  Intron 7   CAGGAagtgtc 
                     tcgtaacttaatgatac <1-----[72998:73128]-1>  gccccc 
                     ttattacctaaccggta                          atattt 


SPP00001562_2.0  319 SLDVLITLLSLGCSGYRKLLKERK                       EM 
                     SLDVLITLLSLG +GY+KLLKERK                       EM 
                     SLDVLITLLSLGSNGYKKLLKERK                       EM 
gi|408541552|gb73149 ttggcaatttcgtagtaactagaaGTAAGCT  Intron 8   CAGga 
                     ctatttcttctgcagaaattaaga<0-----[73221:90439]-0>at 
                     tgtcttcaaataatccggaaaaag                       gg 


SPP00001562_2.0  345 FVYLSTQLKKLAEAHNERLLQTPHNPISL                     
                     F YLS++LKKL+EA+NERLL TPHNPISL                     
                     FSYLSSELKKLSEAYNERLLHTPHNPISL                     
gi|408541552|gb90446 tttttagcaactggtagattcaccacatt                     
                     tcatcgataatcacaaagttaccaactct                     
                     tctgctaagaggatttgaggcattcccta                     


SPP00001562_2.0  374                           MTLKTIDGHHDKAVTQLGSMLFT 
                                               MTL+T+D H  KAVTQLGSMLFT 
                               A:A[gct]        MTLETLDEHSYKAVTQLGSMLFT 
gi|408541552|gb90533 GGTAACTT  Intron 9   CAGCTaacgacggcataggaccgtacta 
                      <1-----[90534:92944]-1>  tctactaaagaactcatgctttc 
                                               gatgagtactcatctatcaggtc 


SPP00001562_2.0  398 RQVSGA                          AVPLGNVQTVSGHTFRG 
                     RQVSGA                           VPLG+VQTVSGHTFRG 
                     RQVSGA           R:R[agg]       VVPLGSVQTVSGHTFRG 
gi|408541552|gb93016 ccgtggAGGTACGTA  Intron 10  CAGGggctgtgcagagcatag 
                     gatcgc  <2-----[93036:95729]-2> ttctgctactggactgg 
                     aggtgc                          tgtggcggcgtcctcac 


SPP00001562_2.0  422 FMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRKEQTRASV 
                     FMSH+D YPCAYLNAAAAIGMK QDVDLFIKRL KCL IVRKEQ+  S  
                     FMSHSDRYPCAYLNAAAAIGMKTQDVDLFIKRLGKCLKIVRKEQSPGSD 
gi|408541552|gb95782 tatctgctctgtcaggggagaaacgggttaaacgattaagaagcacgag 
                     ttcacagacgcatacccctgtacaatatttagtgagtattgaaagcgga 
                     cgccattcttacctcccccgggggcgcgtcggtcgcagacgaagtagtc 


SPP00001562_2.0  471 VSGADRNK-AEDADIEEMALKLDDVL                        
                      S  D++   ED  + EMAL+LD+VL                        
                     ASQVDQDTTTEDGAVGEMALRLDNVL                        
gi|408541552|gb95929 gtcggcgaaagggggggagtacgagc                        
                     ccataaacccaagctgatctgtaatt                        
                     gtgtcgccatacactgagtaacctct                        


//
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a A in phase 1 intron
Making a R in phase 2 intron
>gi|408541552|gb|JH947380.1|:subseq(311516,146006).pep
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRQLLEKGKCPEDGWDESTLELFLHELAV
MDSNNFLGNCGVGEREGRVVSTLVARRHYRFIHGIGRSGDIAAVQPKAAGSSLLNKITNS
LVLDIIKLAGVNTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYILWPRIDQKSCFKSMI
TAGFEPVVIENVLEGDELRTDLQAVEAKVQELGADQILCVHSTTSCFAPRVPDRLEELAV
ICANYGIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNE
SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSSELKKLSEAYN
ERLLHTPHNPISLAMTLETLDEHSYKAVTQLGSMLFTRQVSGARVVPLGSVQTVSGHTFR
GFMSHSDRYPCAYLNAAAAIGMKTQDVDLFIKRLGKCLKIVRKEQSPGSDASQVDQDTTT
EDGAVGEMALRLDNVL
//
>gi|408541552|gb|JH947380.1|:subseq(311516,146006).[50000:96006].sp
ATGAACCGCGAGAGCTTCGCCGCGGGCGAGCGGCTGGTGTCGCCGGCTTACGTGCGGCAG
GGCTGTGAGGCCCGGCGCTCGCACGAGCACCTCATACGGCAGCTCCTGGAGAAGGGCAAG
TGTCCAGAGGATGGTTGGGATGAGAGTACACTTGAACTCTTTCTGCATGAACTTGCCGTC
ATGGACAGCAACAATTTCCTGGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAGTGGTG
TCCACGTTAGTTGCCCGTCGCCATTACAGGTTCATTCATGGAATTGGTCGATCAGGTGAT
ATTGCTGCTGTACAACCAAAAGCTGCAGGTTCTAGCCTTTTGAACAAAATTACGAATTCT
TTAGTCCTGGACATCATAAAGTTGGCTGGTGTCAATACAGTGGCCAACTGCTTTGTCGTT
CCAATGGCAACTGGTATGAGTCTGACACTGTGCTTCTTAACCCTACGGCACAAGAGACCA
AAGGCAAAATATATCCTATGGCCACGAATAGACCAGAAGTCCTGCTTTAAATCCATGATC
ACTGCAGGGTTTGAGCCCGTGGTGATAGAGAACGTTTTAGAAGGTGACGAGTTGCGTACA
GACCTGCAAGCAGTGGAGGCGAAAGTCCAGGAATTGGGGGCTGATCAAATTCTGTGCGTG
CATTCCACGACATCCTGTTTTGCTCCAAGAGTGCCTGACAGATTAGAAGAACTGGCTGTG
ATCTGTGCTAATTACGGCATCCCGCATATAGTCAACAATGCGTACGGTGTACAGTCTTCC
AAGTGTATGCATCTCATTCAGCAGGGAGCTCGAGTTGGTAGAATAGATGCCTTTGTTCAA
AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGTGCTATCATTGCTGGATTTAATGAA
TCCTTCATTCAAGAAATCAGCAAGATGTATCCAGGAAGAGCTTCAGCTTCTCCTTCTTTG
GATGTCCTTATTACCTTATTATCACTTGGATCAAATGGCTACAAGAAGCTATTAAAAGAA
AGAAAGGAGATGTTTTCCTATTTGTCCAGTGAACTAAAGAAACTGTCGGAAGCTTATAAT
GAGAGATTGTTGCACACACCTCATAACCCCATCTCTTTAGCTATGACACTTGAGACACTG
GATGAACACAGTTACAAAGCTGTCACTCAACTTGGCTCAATGCTGTTTACCCGACAGGTG
TCTGGGGCCAGGGTTGTGCCTTTGGGGTCCGTGCAGACCGTGAGTGGCCACACTTTCAGA
GGCTTCATGTCCCACTCAGATCGTTACCCTTGTGCATACCTCAATGCCGCCGCCGCCATC
GGGATGAAGACGCAGGACGTGGACTTGTTTATCAAGAGGCTTGGCAAGTGCTTAAAGATA
GTCAGGAAAGAACAGAGTCCAGGGAGTGACGCGTCTCAGGTTGACCAGGACACCACAACT
GAAGACGGAGCCGTTGGGGAAATGGCTTTAAGACTCGACAATGTCCTT
//
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	match	50000	96006	873.35	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	50000	50113	0.00	+	0	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	50114	51165	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	51166	51320	0.00	+	0	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	51321	54257	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	54258	54376	0.00	+	1	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	54377	54662	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	54663	54821	0.00	+	2	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	54822	60172	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	60173	60326	0.00	+	2	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	60327	65851	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	65852	65954	0.00	+	1	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	65955	72867	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	72868	72997	0.00	+	0	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	72998	73128	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	73129	73220	0.00	+	2	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	73221	90439	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	90440	90533	0.00	+	0	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	90534	92944	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	92945	93035	0.00	+	2	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	intron	93036	95729	0.00	+	.	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
gi|408541552|gb|JH947380.1|:subseq(311516,146006)	GeneWise	cds	95730	96006	0.00	+	1	gi|408541552|gb|JH947380.1|:subseq(311516,146006)-genewise-prediction-1
//
