
genewise output
Score 453.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000052_2.0    1 MKTAENIRGTGSDG--PRKRGLCVLCGLPAAGKSTFARALAHRLQQEQG 
                     MK  E + G   +G  P+KRGLCVLCGLP AGKSTFA  L  RL++EQG 
                     MKAGEAVGGAEGEGQGPQKRGLCVLCGLPGAGKSTFAHTLGLRLRREQG 
gi|408541797|g-54663 aaggggggggggggcgccacgctgctgccgggatatgcacgcccccgcg 
                     tacgactggcagagagcaaggtgttggtcgcgacctcactgtgtggaag 
                     ggcggacaggacggggggggacccccccgcgcgccccccggcggcaggc 


SPP00000052_2.0   48 WAIGVVAYDDVMPDAFLAGARARPA---------                
                     WA+GVV+YDDVMPDAFL  A ARP                          
                     WAVGVVSYDDVMPDAFLDEASARPLAGTKGAESL                
gi|408541797|g-54516 tgggggttgggacggtcgggagcctggaagggtt                
                     gctgttcaaattcacttaacgcgctcgcagcact                
                     gcccgcgctccggcgcccagcaaagtagagggag                


SPP00000052_2.0   73                        PSQWKLLRQELLKYLEYFLMAVINGC 
                                            PSQWKLLRQELL+YL+ FLMAVIN C 
                                            PSQWKLLRQELLRYLDCFLMAVINEC 
gi|408541797|g-54414 GTCAGTG  Intron 1   TAGctctatcccgctatcgtttaggaagt 
                     <0-----[54414:53900]-0>ccagattgaattgatagtttcttaag 
                                            ccggagtaggggacgcccggtctcgt 


SPP00000052_2.0   99 QMSVPPNRTEAMWEDFITCLKDQDLIFSAAFEAQSCYLLTKTAVSRPLF 
                     QMS P  RTEAMW+ FIT LKDQDL+ SAA E  SCY LTKTAVSRPLF 
                     QMSAPHKRTEAMWDGFITSLKDQDLLSSAAPEDPSCYHLTKTAVSRPLF 
gi|408541797|g-53821 catgccaaaggatggtaaatagcgctttggcggctttctaaaggtactt 
                     atcccaagcactgagttcgtaaaattcccccaaccgaatcacctcgctt 
                     ggatacgatacggttttccagtatggttatcgcattccaggtttcatgt 


SPP00000052_2.0  148 LVLDDNFYYQSMRYEVYQLARK                          S 
                     LVLDDNFYYQSMRYEV+QLARK                          S 
                     LVLDDNFYYQSMRYEVFQLARK          Y:Y[tat]        S 
gi|408541797|g-53674 tgtggatttcaaatggtctgcaTGTAATTA  Intron 2   CAGATt 
                     tttaaataaagtgaattatcga <1-----[53607:53369]-1>  c 
                     gtgccccttacgatactggtga                          a 


SPP00000052_2.0  172 LGFCQLFLDCPLETCLQRNGQRPQALPPETIHLMGRKLEKPNPEKNAWE 
                     LGFCQLFLDCPLETCLQRNGQR + LP ETIHLMGRK+EKP+P +N WE 
                     LGFCQLFLDCPLETCLQRNGQRARTLPAETIHLMGRKIEKPSPSRNTWE 
gi|408541797|g-53363 tgttcctcgtccgattcaagcagaaccggaaccagaaagacactaaatg 
                     tgtgatttagctacgtagagagcgctccactattggataacgccgacga 
                     actcgctgttttgctgggtcggggagcaactcggaagaagctccatcga 


SPP00000052_2.0  221 HNSLTIPSPACASEA                          LEVTDLLL 
                     HNSLTI SPA +SE                            EVT LLL 
                     HNSLTIQSPARSSEV           S:S[agc]       QEVTSLLL 
gi|408541797|g-53216 caacaacacgcttggAGGTACGCA  Intron 3   CAGCcggaatcc 
                     aagtctagccgccat  <2-----[53169:51359]-2> aatcgttt 
                     ccccacgtaatttac                          gagttagt 


SPP00000052_2.0  245 TALENPVKYAEDNMEQK                       DTDRIICST 
                     TALENPVK  ED+ EQK                       +TDRIICS+ 
                     TALENPVKNVEDDWEQK                       ETDRIICSS 
gi|408541797|g-51333 agtgacgaaggggtgcaGTAAGTC  Intron 4   TAGgagcaatta 
                     cctaactaataaagaaa<0-----[51282:50096]-0>acagttgcg 
                     ttgatatattgtcgagg                       agcatttat 


SPP00000052_2.0  271 NILHKTDQTLRRIVSQTMKEAKG                           
                     N LH+ DQ LRRIVSQTMKEAKG                           
                     NTLHQVDQMLRRIVSQTMKEAKG                           
gi|408541797|g-50068 aacccggcaccaagtcaaaggag                           
                     actaataattggttcactaacag                           
                     ttttagtggcaatctgaggaaat                           


//
Making a Y in phase 1 intron
Making a S in phase 2 intron
>gi|408541797|gb|JH947135.1|:subseq(8433457,104663).pep
MKAGEAVGGAEGEGQGPQKRGLCVLCGLPGAGKSTFAHTLGLRLRREQGWAVGVVSYDDV
MPDAFLDEASARPLAGTKGAESLPSQWKLLRQELLRYLDCFLMAVINECQMSAPHKRTEA
MWDGFITSLKDQDLLSSAAPEDPSCYHLTKTAVSRPLFLVLDDNFYYQSMRYEVFQLARK
YSLGFCQLFLDCPLETCLQRNGQRARTLPAETIHLMGRKIEKPSPSRNTWEHNSLTIQSP
ARSSEVSQEVTSLLLTALENPVKNVEDDWEQKETDRIICSSNTLHQVDQMLRRIVSQTMK
EAKG
//
>gi|408541797|gb|JH947135.1|:subseq(8433457,104663).[54663:49998].sp
ATGAAGGCCGGGGAGGCAGTCGGAGGGGCGGAAGGCGAGGGGCAGGGGCCGCAGAAGCGG
GGACTCTGCGTCCTCTGCGGCCTCCCGGGCGCGGGCAAGTCCACCTTCGCCCACACCCTG
GGGCTCCGGCTGCGCCGAGAGCAGGGCTGGGCCGTCGGCGTGGTCTCGTACGATGACGTC
ATGCCGGACGCGTTCCTCGACGAAGCGAGCGCACGACCATTGGCTGGAACGAAAGGGGCG
GAGTCATTGCCCTCCCAGTGGAAATTGCTTCGACAGGAGCTGTTGAGATACCTGGACTGC
TTCTTGATGGCTGTCATTAACGAGTGTCAGATGTCAGCTCCACACAAGAGAACTGAAGCC
ATGTGGGATGGTTTTATTACCAGCTTAAAGGATCAAGATCTGTTGTCTTCTGCAGCTCCC
GAGGACCCATCTTGTTACCACTTAACGAAGACTGCTGTTTCCAGACCTTTGTTTTTGGTT
TTGGACGACAACTTCTATTATCAAAGCATGAGATATGAAGTCTTTCAGTTGGCTCGGAAA
TATTCATTAGGCTTTTGCCAGCTCTTTCTGGATTGTCCTCTTGAGACCTGTTTGCAGAGG
AATGGCCAGAGGGCGAGGACACTGCCCGCAGAAACCATTCACCTGATGGGAAGAAAGATA
GAAAAGCCCAGTCCCTCCAGAAATACCTGGGAACACAACAGCCTCACAATCCAGAGTCCA
GCACGTTCTTCTGAAGTCAGCCAGGAAGTGACTAGTTTACTGCTTACTGCTTTGGAAAAT
CCAGTTAAAAATGTTGAGGATGACTGGGAACAGAAGGAAACGGACCGAATTATTTGTTCA
AGTAATACTCTTCATCAAGTGGATCAGATGCTCCGAAGAATTGTCTCTCAGACAATGAAG
GAAGCAAAAGGT
//
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	match	54663	50000	462.59	-	.	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	cds	54663	54415	0.00	-	0	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	intron	54414	53900	0.00	-	.	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	cds	53899	53608	0.00	-	0	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	intron	53607	53369	0.00	-	.	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	cds	53368	53170	0.00	-	2	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	intron	53169	51359	0.00	-	.	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	cds	51358	51283	0.00	-	1	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	intron	51282	50096	0.00	-	.	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
gi|408541797|gb|JH947135.1|:subseq(8433457,104663)	GeneWise	cds	50095	50000	0.00	-	0	gi|408541797|gb|JH947135.1|:subseq(8433457,104663)-genewise-prediction-1
//
