
genewise output
Score 367.03 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

gi|110825976|re    1 MGLPQLWLWLKRLVIFLQVALEVAVGKVLMTLFPGRVKQSILAMGQKTG 
                     MG P+  LWLKRL +FLQVAL VAVGKV MTLFP +VKQ+ILA+      
                     MGPPRPGLWLKRLWVFLQVALHVAVGKVRMTLFPEKVKQNILAL----- 
gi|408541798|gb50000 agccccgctcaactgttcggccggggagcaactcgagacaatgc      
                     tgccgcgtgtagtgtttatctatctgatgtcttcaataaattct      
                     ggacgagcgggacgacgggcgtgtgcagagacctggcggccgca      


gi|110825976|re   50 MARNPRFAPDNWVPTFFSIQYFWFVLKVRWQRLEDRAEFGGLAPNCTVV 
                         P F  D W PTFFSI YFWF+LKV WQRLED A+ GGLAPNC V+ 
                     ---YPNFNYDVWGPTFFSIPYFWFILKVYWQRLEDDAKQGGLAPNCPVI 
gi|408541798|gb50132    tcatatggtgcattaacttttacagttcatggggacggcgcatcga 
                        acataaatggccttgtcatgtttatagagtaaacaaggtccagctt 
                        ccctctcgggacccttaccgcccactggaaactcgagtgcaccggt 


gi|110825976|re   99 CLSGQKCNIWDFIQ                          SRPLVLNFG 
                      LSGQ+CNIWDF++                           RPLVLNFG 
                     RLSGQECNIWDFMK          G:G[ggt]        VRPLVLNFG 
gi|408541798|gb50270 cctgcgtaatgtaaGGTCAGTA  Intron 1   TAGGTgaccgcatg 
                     gtcgaagatgatta <1-----[50313:69111]-1>  tgctttatg 
                     cctcagcctgccga                          caagggtta 


gi|110825976|re  123 SCTXPSFLLKFDQFKRLVDDFASTADFLIIYIEEAHAT            
                     SCTXPSFLLKFD+FKRL++DF+S ADFLIIYIEEAH              
                     SCTXPSFLLKFDRFKRLIEDFSSVADFLIIYIEEAHPA            
gi|408541798|gb69141 atatcttctatgctaacaggtatgggtcaatagggccg            
                     ggcgcctttatagtagttaatgctcattttataacacc            
                     cctatattaatctcgataacttaaattcctttaaataa            


gi|110825976|re  161                           GWAFKNNVDIRQHRSLQERVRAA 
                                               GWAFKNNV IR HR+LQ+R+RAA 
                               D:D[gat]        GWAFKNNVVIRNHRNLQDRLRAA 
gi|408541798|gb69255 GGTATAAA  Intron 2   TAGATgtgtaaaggaaaccaccgcccgg 
                      <1-----[69256:77133]-1>  ggctaaatttgaagataagtgcc 
                                               tgttgccgccgtcgccgcgtgat 


gi|110825976|re  185 RMLLARSPQCPVVVDTMQNQSSQLYAALPERLYVIQEGRICYK       
                     R+LL RSPQCPVVVDTMQN SSQ YAALPERLYV+QEGRI YK       
                     RLLLERSPQCPVVVDTMQNVSSQRYAALPERLYVLQEGRILYK       
gi|408541798|gb77205 ccccgaacctcggggaacagaacctggccgactgccggaacta       
                     gtttaggcagctttactaatggagacctcagtattaaggttaa       
                     cgtggaccgctgggccggcgccgccatgaggctgcggcgtccg       


gi|110825976|re  228                        GKAGPWNYNPEEVRAVLEKL       
                                            GK GP NY+PEEVRAVLEKL       
                                            GKPGPGNYHPEEVRAVLEKL       
gi|408541798|gb77334 GTGGTGA  Intron 3   CAGgacgcgatccgggcggcgac       
                     <0-----[77334:81695]-0>gacgcgaaacaatgcttaat       
                                            tatctgcctagagtttgagc       


//
Making a G in phase 1 intron
Making a D in phase 1 intron
>gi|408541798|gb|JH947134.1|:subseq(10266956,127345).pep
MGPPRPGLWLKRLWVFLQVALHVAVGKVRMTLFPEKVKQNILALYPNFNYDVWGPTFFSI
PYFWFILKVYWQRLEDDAKQGGLAPNCPVIRLSGQECNIWDFMKGVRPLVLNFGSCTXPS
FLLKFDRFKRLIEDFSSVADFLIIYIEEAHPADGWAFKNNVVIRNHRNLQDRLRAARLLL
ERSPQCPVVVDTMQNVSSQRYAALPERLYVLQEGRILYKGKPGPGNYHPEEVRAVLEKL
//
>gi|408541798|gb|JH947134.1|:subseq(10266956,127345).[50000:81755].sp
ATGGGGCCACCCCGGCCAGGGCTCTGGCTGAAGAGACTCTGGGTATTCTTGCAGGTGGCC
CTGCATGTGGCTGTGGGCAAAGTGCGAATGACACTCTTCCCTGAGAAGGTCAAGCAGAAC
ATCTTGGCCCTATACCCCAACTTTAACTATGACGTGTGGGGGCCAACCTTCTTCAGTATT
CCATACTTCTGGTTCATCCTCAAAGTCTATTGGCAGAGATTAGAAGACGATGCCAAGCAA
GGGGGTCTGGCCCCAAACTGCCCGGTGATTCGCCTCTCTGGCCAAGAGTGCAACATTTGG
GACTTCATGAAAGGTGTCAGACCACTGGTGCTGAATTTTGGAAGCTGCACTTGACCTTCA
TTTCTTTTAAAATTTGACCGTTTCAAGAGACTTATAGAAGACTTTAGTTCAGTAGCAGAT
TTTCTCATCATTTATATTGAAGAAGCACATCCAGCAGATGGTTGGGCTTTTAAGAACAAC
GTGGTCATCAGGAATCACCGGAACCTCCAGGACCGGCTTCGGGCAGCTCGCCTGCTTCTG
GAGAGAAGCCCCCAGTGCCCTGTGGTGGTGGACACCATGCAGAACGTGAGCAGCCAGCGC
TACGCAGCTCTGCCAGAGAGGCTCTATGTGCTCCAGGAGGGCAGGATTCTCTACAAGGGT
AAACCTGGCCCTGGGAACTACCATCCAGAGGAAGTGCGTGCTGTTCTGGAAAAGCTC
//
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	match	50000	81755	374.02	+	.	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	cds	50000	50312	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	intron	50313	69111	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	cds	69112	69255	0.00	+	2	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	intron	69256	77133	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	cds	77134	77333	0.00	+	2	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	intron	77334	81695	0.00	+	.	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
gi|408541798|gb|JH947134.1|:subseq(10266956,127345)	GeneWise	cds	81696	81755	0.00	+	0	gi|408541798|gb|JH947134.1|:subseq(10266956,127345)-genewise-prediction-1
//
