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_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
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 Blastx evalue: 4e-06
 Query name: gi|57163803|ref|NP_001009267.1| type I iodothyronine deiodinase [Felis catus] >gi|182702116|sp|Q6V915.2|IOD1_FELCA RecName: Full=Type I iodothyronine deiodinase; AltName: Full=5DI; AltName: Full=DIOI; AltName: Full=Type 1 DI; AltName: Full=Type-I 5'-deiodinase >gi|37537730|gb|AAQ92943.1| type I iodothyronine deiodinase [Felis catus]
 Query range: 108-244  (total 244)

 Target: /data/www-rg/seblastian_results/240385087/tempfiles/temptarget.fasta
 Chromosome: gi|408541798|gb|JH947134.1|:subseq_10266956,127345_ Strand: +
 Positions:
 -Exon 1  69111        69255
 -Exon 2  77134        77333
 -Exon 3  81696        81761

 Redox box: no

Query   GNRPLVLNFGSCTUPSFLFKFDQFKRLIEDFCSIADFLIIYIEEAHASD <---Intron---> GWAFKNNVNIRNHRNLQDRLQAACLLLDRSPRCPV
        | |||||||||||||||| |||/|||||||| |/|||||||||||| /| <   7878bp   > |||||||| |||||||||||/|| |||/|||/|||
Target  GVRPLVLNFGSCTUPSFLLKFDRFKRLIEDFSSVADFLIIYIEEAHPAD                GWAFKNNVVIRNHRNLQDRLRAARLLLERSPQCPV
        ggaccgcatgatatcttctatgctaacaggtatgggtcaatagggccgg                gtgtaaaggaaaccaccgcccggccccgaacctcg
        gtgctttatgggcgcctttatagtagttaatgctcattttataacacc                aggctaaatttgaagataagtgccgtttaggcagct
        tcaagggttacctatattaatctcgataacttaaattcctttaaataa                ttgttgccgccgtcgccgcgtgatcgtggaccgctg
                     *                                                                                      

Query   VVDTMKNQSSRLYAALPERLYVLQAGRILYK <---Intron---> GKPGPWNYHPEEVRAVLEKLHS
        |||||/| ||/ |||||||||||| |||||| <   4362bp   > ||||| |||||||||||||| |
Target  VVDTMQNVSSQRYAALPERLYVLQEGRILYK                GKPGPGNYHPEEVRAVLEKLSS
        gggaacagaacctggccgactgccggaacta                gacgcgatccgggcggcgacaa
        ttactaatggagacctcagtattaaggttaa                gacgcgaaacaatgcttaatgg
        ggccggcgccgccatgaggctgcggcgtccg                tatctgcctagagtttgagcct
                                                                             
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 946 ; UGA-SECIS: 1315

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|408541798|gb|JH947134.1|:subseq_10266956,127345_ Strand = + Positions = 82708 - 82777
 Found by:  Infernal (score=24.1) Covels (score=23.52)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -5.22

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({({{(.......{[[{(({(((((((..........-----...)))))))}))}]]}----....)}})})...
 target  UCUUCUCAUGUGUUUAUGAUGGCCACAGCCUAAAGUAUGC-----AACGGUUGUGACUUGAC----UUGAAAUAAAUAU
                         ****           ^^^                        ****                 