
genewise output
Score 1018.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_1.0    1 MSSPPGRRARLASPGTSRPSSEAREELRRRLRDLIEGNRVMIFSKSYCP 
                     +SSPPGRRARLA+PGT     E RE +RRRL+DLIE NRVMIFSKSYCP 
                     VSSPPGRRARLATPGTGTSIVETREAMRRRLQDLIENNRVMIFSKSYCP 
gi|408541642|-126636 gttccgccgccgacgagataggacggacccccgcagaacgaataaattc 
                     tccccgggcgtcccgcgccttacgactgggtaattaaagttttgagagc 
                     gggtggcgccggcgggccgctgcgggggcccgcctacccggcccgtcta 


SPP00000081_1.0   50 HSTR                       VKELFSSLGVVYNILELDQV   
                     HSTR                       VKELFSSLGV YN LELD++   
                     HSTR                       VKELFSSLGVEYNALELDKI   
gi|408541642|-126489 caacGTGAGCA  Intron 1   CAGgagcttttgggtagtgcgaa   
                     agcg<0-----[126477:11673-0>taattcctgtaaactataat   
                     ccgg                       taactttgatatttgattgt   


SPP00000081_1.0   74                           DGASVQEVLTEISNQKTVPNIFV 
                                               +G+SVQEVL EI+NQKTVPN+FV 
                               D:D[gat]        NGSSVQEVLLEITNQKTVPNVFV 
gi|408541642|-116670 GGTAAGTA  Intron 2   TAGATagtagcggctgaaacaagcagtg 
                      <1-----[116669:11510-1>  agcgtaatttatcaaactcattt 
                                               tgcttaatgagcttgatgctttg 


SPP00000081_1.0   98 NKVHVGGCDRTFQ                       AHQNGLLQKLLQD 
                     NKVH+GGCD+T+Q                       AHQ+GLL+K+LQ+ 
                     NKVHMGGCDQTLQ                       AHQSGLLKKVLQE 
gi|408541642|-115033 aagcaggtgcaccGTAATAA  Intron 3   CAGgccagttaagccg 
                     aatatgggaacta<0-----[114994:11084-0>caaggttaattaa 
                     taatgtatcattg                       atgtcaaggctga 


SPP00000081_1.0  124 DS----AHDYDLIIIGGGSGGLSCAK                        
                     DS     +DYDLI+IGGGSGGL+CAK                        
                     DSRGSGTYDYDLIVIGGGSGGLACAK                        
gi|408541642|-110808 gtcgtgatgtgcagagggtggcgtgaGTAGGAA  Intron 4   TAG 
                     acggcgcaaaattttgggcggtcgca<0-----[110730:10915-0> 
                     tatttagttttctcttttttctctcg                        


SPP00000081_1.0  146 EAANLGKKVMVLDFVVPSPQGTTW                          
                     EAA LGKKVMVLDFVVPSP GTTW                          
                     EAAVLGKKVMVLDFVVPSPHGTTW          G:G[ggt]        
gi|408541642|-109152 ggggtgaagagcgtggctccgaatGGTGAGCT  Intron 5        
                     accttgaattttatttcccagccg <1-----[109079:105335    
                     atgtgagatggactgcgattcacg                          


SPP00000081_1.0  170      LGGTCVNVGCIPKKLMHQAALLGHALQDAKKYGWEYNQQ      
                          LGGTCVNVGCIPKKLMHQAALLG AL D++KYGWEYNQQ      
                          LGGTCVNVGCIPKKLMHQAALLGQALHDSRKYGWEYNQQ      
gi|408541642|-105337 TAGGTcggatgaggtacaataccggctgcgtcgtaatgtgtacc      
                     -1>  tggcgtatggtcaattaaccttgactaacgaaggaaaaa      
                          ttcatctactttgaggtaactgagagccagattggttaa      


SPP00000081_1.0  210                           KHNWEAMTEAIQSHIGSLNWGYR 
                                               KHNWE M EAIQ++IGSLNWGY+ 
                               V:V[gtt]        KHNWETMIEAIQNYIGSLNWGYK 
gi|408541642|-105215 GGTGAGTA  Intron 6   CAGTTacatgaaaggacatagttatgta 
                      <1-----[105214:95249-1>  aaagacttactaaatgctaggaa 
                                               gccggagaaatgccactatgtcg 


SPP00000081_1.0  234 VTLREKGVTYVNSFGEFVDLHKIK                       AT 
                     ++LREK VTY+NS+G FVD HKIK                       AT 
                     LSLREKAVTYINSYGTFVDHHKIK                       AT 
gi|408541642|g-95177 tttagaggataattgatggccaaaGTACCAT  Intron 7   AAGga 
                     tctgaactcatacagcttaaaata<0-----[95105:89784]-0>cc 
                     gtggaatgctctttaattctcaag                       ac 


SPP00000081_1.0  260 NKKGQETFYTASKFVIATGERPRYLGIQGDKEYCIT              
                     N+K QET YTA+KFVIATGERPRYLGIQGDKEYCIT              
                     NRKEQETSYTAAKFVIATGERPRYLGIQGDKEYCIT              
gi|408541642|g-89777 aaagcgattaggatgagaggaccttgacggagttaa              
                     agaaaaccacccatttccgagcgatgtagaaaagtc              
                     taagaattcttaatcaactagagtaacaatgacttt              


SPP00000081_1.0  296                           DDLFSLPYCPGCTLVVGASYVGL 
                                               DDLFSLPYCPG TLVVGASYV L 
                                S:S[agt]       DDLFSLPYCPGKTLVVGASYVAL 
gi|408541642|g-89669 AGGTAAGAT  Intron 8   CAGTggcttccttcgaatggggttggt 
                       <2-----[89667:86105]-2> aattctcagcgactttgccatct 
                                               tctttatcctcaaatgtatttcg 


SPP00000081_1.0  320 ECAGFLAGLGLDVTVMVRSVLLRGFDQEMAEKVGSYLEQQGVKFQRKFT 
                     ECAGFLAG+GLDVTVMVRS+LLRGFDQEMAEKVGSY+EQ GVKF RKF  
                     ECAGFLAGIGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFI 
gi|408541642|g-86034 gtggtcggagtggagagctacccgtgcgaggaggttagccggattaata 
                     agcgttcgtgtatctttgctttggtaaatcaatgcataaagtattgatt 
                     ataatttctaatcagggaaccttcttaagagagtctgaatttgtaaata 


SPP00000081_1.0  369 PIL                       VQQLEKGLPGKLKVVAKSTEGPE 
                     P+                        +QQLEKG PGKL+VVAKS EGPE 
                     PVT                       IQQLEKGTPGKLRVVAKSIEGPE 
gi|408541642|g-85887 cgaGTAAGTT  Intron 9   TAGacctgagacgacagggataggcg 
                     ctc<0-----[85878:83540]-0>taataagccgatgttcactagca 
                     tgg                       tagggatatagcaggtactaaaa 


SPP00000081_1.0  395 TVEGIYNT                       VLLAIGRDSCTRKIGLEK 
                     T+E +YNT                       VLLAIGRDSCTRKIGLEK 
                     TIEDVYNT                       VLLAIGRDSCTRKIGLEK 
gi|408541642|g-83470 aagggtaaGTAAGAC  Intron 10  CAGgttgagcgttaaaagtga 
                     ctaataac<0-----[83446:77775]-0>tttctggacgcgatgtaa 
                     ttacgtca                       tgaaattcataaatgggg 


SPP00000081_1.0  421 IGVKINE                          NGKIPVNDVEQTNVPH 
                     IGVKINE                           GKIPVNDVEQTNVP+ 
                     IGVKINE           K:K[aag]       TGKIPVNDVEQTNVPY 
gi|408541642|g-77720 aggaaagAAGTAAGTA  Intron 11  TAGGagaacgagggcaagct 
                     tgtataa  <2-----[77697:69002]-2> cgatctaataacatca 
                     tacactg                          tcaaaattgaactgtt 


SPP00000081_1.0  445 VYAIGDILDGKPELTPVAIQAGKLLARRLFGVSLEK              
                     VYAIGDIL+GKPELTPVAIQAGKLLARRLFG SLEK              
                     VYAIGDILEGKPELTPVAIQAGKLLARRLFGGSLEK              
gi|408541642|g-68952 gtgaggatggacgcacggacggaccgcactggttga              
                     tactgattagacatcctctacgattcggttggctaa              
                     ctctcttggtaagcttgcagacggataattactaag              


SPP00000081_1.0  481                        CDYINIPTTVFTPLEYGCCGLSEEKA 
                                            CDYIN+PTTVFTPLEYGCCGLSEEKA 
                                            CDYINVPTTVFTPLEYGCCGLSEEKA 
gi|408541642|g-68844 GTAAGTT  Intron 12  CAGtgtaagcaagtactgtgttgttggag 
                     <0-----[68844:61316]-0>gaatatcccttcctaaggggtcaaac 
                                            ttttttatagtacgattctaatagat 


SPP00000081_1.0  507 IEMYKKENLE                       VYHTLFWPLEWTVAGR 
                     IE+Y K+NLE                       VYHTLFWPLEWT+A R 
                     IEVYTKDNLE                       VYHTLFWPLEWTIADR 
gi|408541642|g-61237 aggtaagacgGTAAGAA  Intron 13  CAGgtcatttccgtaagga 
                     tatacaaata<0-----[61207:58717]-0>taacttgctagctcag 
                     taataattaa                       atttacgtgggaatca 


SPP00000081_1.0  533 DNNTCYAKIICNKFDN                       ERVVGFHLLG 
                     DNNTCYAKIICNK DN                       +RV+GFH+ G 
                     DNNTCYAKIICNKRDN                       DRVIGFHVFG 
gi|408541642|g-58668 gaaattgaaataacgaGTATGTG  Intron 14  AAGgcgagtcgtg 
                     aaacgacattgaagaa<0-----[58620:50432]-0>agttgtattg 
                     ccttttagatctagct                       tagaatttta 


SPP00000081_1.0  559 PNAGEITQGFAAAMKCGLTKQLLDDTIGIHPTCGE               
                     PNAGEITQGFA AMKCGLTKQLL+DTIGIHPTCGE               
                     PNAGEITQGFAVAMKCGLTKQLLNDTIGIHPTCGE               
gi|408541642|g-50401 cagggaacgtgggaatgcaacccagaagaccatgg               
                     cacgatcagtctctaggtcaattaactgtaccgga               
                     atttatcaatagagattcaaggcttttatccatgg               


SPP00000081_1.0  594                        VFTTLEITKSSGLDITQKGC       
                                            VFTTLEITKSSGL ITQKGC       
                                            VFTTLEITKSSGLAITQKGC       
gi|408541642|g-50296 GTATGGA  Intron 15  CAGgtaatgaaattgcgaacagt       
                     <0-----[50296:50066]-0>ttcctatcaccgtctcaagg       
                                            acatgaccgggaaaccgacc       


//
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a V in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
>gi|408541642|gb|JH947290.1|:subseq(3880267,176636).pep
VSSPPGRRARLATPGTGTSIVETREAMRRRLQDLIENNRVMIFSKSYCPHSTRVKELFSS
LGVEYNALELDKIDNGSSVQEVLLEITNQKTVPNVFVNKVHMGGCDQTLQAHQSGLLKKV
LQEDSRGSGTYDYDLIVIGGGSGGLACAKEAAVLGKKVMVLDFVVPSPHGTTWGLGGTCV
NVGCIPKKLMHQAALLGQALHDSRKYGWEYNQQVKHNWETMIEAIQNYIGSLNWGYKLSL
REKAVTYINSYGTFVDHHKIKATNRKEQETSYTAAKFVIATGERPRYLGIQGDKEYCITS
DDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQEMAEKVGSYM
EQHGVKFLRKFIPVTIQQLEKGTPGKLRVVAKSIEGPETIEDVYNTVLLAIGRDSCTRKI
GLEKIGVKINEKTGKIPVNDVEQTNVPYVYAIGDILEGKPELTPVAIQAGKLLARRLFGG
SLEKCDYINVPTTVFTPLEYGCCGLSEEKAIEVYTKDNLEVYHTLFWPLEWTIADRDNNT
CYAKIICNKRDNDRVIGFHVFGPNAGEITQGFAVAMKCGLTKQLLNDTIGIHPTCGEVFT
TLEITKSSGLAITQKGC
//
>gi|408541642|gb|JH947290.1|:subseq(3880267,176636).[126636:50004].sp
GTGTCGTCGCCTCCGGGGCGCCGGGCCCGCCTGGCGACCCCGGGGACGGGCACCTCGATC
GTTGAGACCCGGGAGGCGATGCGGCGCCGCCTCCAGGACCTCATTGAAAACAACCGCGTG
ATGATCTTCAGCAAGAGTTACTGTCCACACAGCACGCGGGTTAAAGAACTCTTTTCTTCT
TTGGGAGTTGAATATAATGCTTTGGAACTTGATAAGATTGATAATGGGTCCAGTGTTCAA
GAAGTTCTGTTAGAGATCACTAATCAGAAAACTGTGCCCAATGTTTTTGTGAATAAAGTA
CATATGGGTGGATGTGACCAAACTCTTCAGGCACATCAGAGTGGCTTATTAAAGAAGGTC
CTTCAGGAAGATTCACGTGGTTCTGGAACGTATGATTATGATCTCATTGTCATTGGTGGT
GGTTCTGGTGGCCTTGCCTGTGCCAAGGAAGCTGCGGTTTTGGGAAAGAAAGTTATGGTG
CTAGACTTTGTGGTCCCGTCACCTCATGGCACAACCTGGGGTCTTGGTGGCACATGTGTC
AATGTAGGCTGTATTCCTAAGAAATTGATGCATCAAGCAGCCCTTTTGGGACAGGCATTG
CACGACTCAAGGAAATATGGTTGGGAGTATAATCAACAAGTTAAGCACAACTGGGAGACA
ATGATAGAAGCAATTCAGAACTACATAGGCTCTTTAAATTGGGGTTACAAGTTGTCTTTG
AGGGAAAAAGCTGTGACCTATATCAATTCTTATGGAACATTTGTTGACCATCACAAAATA
AAGGCAACCAATAGAAAAGAGCAAGAAACTTCTTACACTGCTGCAAAATTTGTCATAGCA
ACCGGTGAAAGGCCACGGTATTTAGGAATCCAAGGAGATAAGGAATACTGTATTACTAGT
GATGACCTTTTTTCTCTACCTTACTGCCCTGGCAAAACATTAGTTGTGGGTGCATCTTAT
GTTGCCTTGGAATGTGCAGGATTTCTTGCTGGCATTGGATTAGATGTCACAGTGATGGTG
CGATCAATCCTCCTTCGTGGCTTTGATCAAGAAATGGCAGAGAAAGTGGGTTCCTATATG
GAACAACATGGTGTTAAGTTTTTAAGAAAATTTATACCTGTGACGATTCAACAGTTGGAG
AAAGGTACACCTGGAAAGCTCAGAGTGGTGGCTAAATCCATTGAAGGACCAGAAACTATT
GAAGACGTGTATAACACAGTTTTGTTAGCAATAGGTCGTGACTCATGTACAAGAAAAATT
GGGTTGGAGAAGATTGGAGTCAAAATCAATGAGAAGACTGGCAAAATACCAGTAAATGAT
GTGGAACAAACCAATGTGCCTTATGTCTATGCCATTGGCGATATTTTGGAGGGTAAACCA
GAGCTCACTCCTGTGGCCATACAGGCAGGCAAGCTGCTAGCTCGAAGACTTTTTGGAGGC
TCTTTAGAAAAGTGTGATTATATTAATGTTCCAACTACAGTGTTTACACCCTTGGAATAT
GGTTGCTGTGGATTATCTGAAGAGAAAGCTATTGAAGTATATACAAAAGATAATCTAGAA
GTATATCATACTTTATTCTGGCCTCTGGAGTGGACAATAGCTGACAGAGACAACAATACT
TGTTATGCAAAGATAATTTGCAATAAACGGGACAATGATCGAGTGATAGGATTTCATGTT
TTTGGACCAAATGCTGGTGAAATTACCCAAGGATTTGCAGTGGCAATGAAATGTGGTCTC
ACAAAACAGCTGCTCAATGATACTATTGGAATTCACCCCACATGTGGGGAGGTATTCACA
ACTTTGGAAATCACCAAGTCGTCGGGACTAGCAATCACCCAGAAAGGCTGC
//
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	match	126636	50006	1021.45	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	126636	126478	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	126477	116731	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	116730	116670	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	116669	115105	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	115104	114995	0.00	-	2	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	114994	110848	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	110847	110731	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	110730	109153	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	109152	109080	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	109079	105335	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	105334	105215	0.00	-	2	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	105214	95249	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	95248	95106	0.00	-	2	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	95105	89784	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	89783	89668	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	89667	86105	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	86104	85879	0.00	-	1	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	85878	83540	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	83539	83447	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	83446	77775	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	77774	77698	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	77697	69002	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	69001	68845	0.00	-	1	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	68844	61316	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	61315	61208	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	61207	58717	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	58716	58621	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	58620	50432	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	50431	50297	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	intron	50296	50066	0.00	-	.	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
gi|408541642|gb|JH947290.1|:subseq(3880267,176636)	GeneWise	cds	50065	50006	0.00	-	0	gi|408541642|gb|JH947290.1|:subseq(3880267,176636)-genewise-prediction-1
//
