
genewise output
Score 413.81 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001587_2.0    1 MSFLQDPSFFSMGMWSIGVGAVGAAAVALLLANTDMFLSKPRKAALEYL 
                     MSFLQDPSFF+MG+W IG GA+GA A+AL LANTD+FLSKP+KA LEYL 
                     MSFLQDPSFFAMGVWCIGAGALGATALALFLANTDVFLSKPQKATLEYL 
gi|408541263|gb50000 attccgcattgaggttaggggcggagcgctcgaaggtctaccagacgtt 
                     tcttaacgttctgtggtgcgctgccctctttcacatttcacaacctaat 
                     gtccgtatcccggggcttagtggcaagagtgccacctgcacgaacggcg 


SPP00001587_2.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     ED+DLKTL+K                          PRTFKAKELWEKN 
                     EDVDLKTLDK          E:E[gaa]        PRTFKAKELWEKN 
gi|408541263|gb50147 ggggcaacgaGGTAAGTA  Intron 1   CAGAAcaatagagctgaa 
                     aatatactaa <1-----[50178:53026]-1>  cgctacaatgaaa 
                     gcgcgaattg                          cgttaaggcgagt 


SPP00001587_2.0   74 GAVIMAVRRPGCFLCRA                       EAADLMSLK 
                     GA+IMAVRRPGCFLCR                        EAADL SLK 
                     GAIIMAVRRPGCFLCRE                       EAADLSSLK 
gi|408541263|gb53068 ggaaaggcacgttctcgGTAAGTA  Intron 2   TAGggggcttca 
                     gctttctggcggttgga<0-----[53119:80470]-0>accatccta 
                     atatgtgggtctcccag                       gtacgttgg 


SPP00001587_2.0  100 PKLDELGVPLYAVVKEQVKREVEDFQPYFKGEIFLDEK            
                     PKLDELG+PLYAVVKEQV+ EVEDFQPYFKGEIF+DEK            
                     PKLDELGIPLYAVVKEQVRTEVEDFQPYFKGEIFMDEK            
gi|408541263|gb80498 catggcgacctgggagcgaaggggtccttaggatagga            
                     cataatgtctacttaaatgcataatacatagatttaaa            
                     cggtggtccgttgggggcataggccgctcaaaccgtag            


SPP00001587_2.0  138                        KKFYGPERRKMMFMGLIRLGVWYNSF 
                                            KKFYGP+RRKMMFMG +RLGVWYN F 
                                            KKFYGPQRRKMMFMGFLRLGVWYNFF 
gi|408541263|gb80612 GTCTGTC  Intron 3   CAGaattgccacaaatagtcccggttatt 
                     <0-----[80612:81447]-0>aatagcaggattttgttgtgtgaatt 
                                            agctttaaggggtgctctgtcgcccc 


SPP00001587_2.0  164 RAWNGGFSGNLEGEGFILGGVFVIGSGKQ                     
                     RAWNGGFSGNLEGEGFILGGVFV+GSGKQ                     
                     RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
gi|408541263|gb81526 agtaggttgatggggtacgggtgggtgacGTAAATT  Intron 4    
                     gcgaggtcgatagagtttggttttgcgaa<0-----[81613:88915] 
                     gcgttcctacggcattctaattggaaaag                     


SPP00001587_2.0  193    GILLEHREKEFGDRVNPLSVLEAVKKIKLQT                
                        GILLEH EKEFGD+VNP+SVLEA +KIK QT                
                        GILLEHWEKEFGDKVNPVSVLEAARKIKPQT                
gi|408541263|gb88913 CAGgaccgctgagtggagacgtgcgggaaaacca                
                     -0>gtttaagaaatgaatactcttaccgatacac                
                        ctttacggaatacaatatttgatcggagagc                


//
Making a E in phase 1 intron
>gi|408541263|gb|JH947669.1|:subseq(191450,139008).pep
MSFLQDPSFFAMGVWCIGAGALGATALALFLANTDVFLSKPQKATLEYLEDVDLKTLDKE
PRTFKAKELWEKNGAIIMAVRRPGCFLCREEAADLSSLKPKLDELGIPLYAVVKEQVRTE
VEDFQPYFKGEIFMDEKKKFYGPQRRKMMFMGFLRLGVWYNFFRAWNGGFSGNLEGEGFI
LGGVFVVGSGKQGILLEHWEKEFGDKVNPVSVLEAARKIKPQT
//
>gi|408541263|gb|JH947669.1|:subseq(191450,139008).[50000:89008].sp
ATGTCTTTCCTCCAGGATCCAAGTTTCTTCGCCATGGGGGTGTGGTGCATTGGTGCAGGG
GCTCTGGGGGCCACAGCACTGGCACTGTTTCTGGCCAACACAGACGTCTTTCTGTCCAAA
CCCCAGAAAGCAACCCTGGAGTACTTGGAGGACGTGGACCTGAAAACACTTGATAAGGAA
CCCAGGACTTTTAAAGCAAAGGAGCTCTGGGAAAAGAATGGAGCTATAATTATGGCTGTG
CGGAGGCCTGGCTGTTTCCTCTGCCGAGAGGAGGCTGCAGACCTGTCTTCTCTGAAGCCC
AAGTTGGATGAGCTGGGTATCCCCCTGTATGCTGTGGTGAAGGAGCAGGTCAGAACTGAA
GTGGAGGACTTCCAGCCCTATTTCAAAGGAGAAATCTTCATGGATGAAAAGAAAAAGTTC
TATGGTCCTCAAAGACGGAAGATGATGTTTATGGGCTTTCTCCGTCTGGGTGTCTGGTAC
AACTTCTTCAGGGCCTGGAATGGTGGCTTCTCTGGAAACTTGGAGGGCGAAGGTTTTATC
CTTGGAGGAGTTTTTGTGGTGGGATCAGGAAAACAGGGCATTCTTCTTGAACACTGGGAG
AAAGAATTTGGAGACAAAGTAAATCCAGTTTCTGTTCTGGAAGCTGCCAGGAAGATAAAG
CCACAGACC
//
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	match	50000	89008	413.81	+	.	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	cds	50000	50177	0.00	+	0	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	intron	50178	53026	0.00	+	.	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	cds	53027	53118	0.00	+	2	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	intron	53119	80470	0.00	+	.	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	cds	80471	80611	0.00	+	0	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	intron	80612	81447	0.00	+	.	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	cds	81448	81612	0.00	+	0	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	intron	81613	88915	0.00	+	.	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
gi|408541263|gb|JH947669.1|:subseq(191450,139008)	GeneWise	cds	88916	89008	0.00	+	0	gi|408541263|gb|JH947669.1|:subseq(191450,139008)-genewise-prediction-1
//
