
genewise output
Score 380.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000116_1.0    1 MRLLLLLLVAASAVVRSEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLL+AAS VV SEASANLGGVPSKRLKMQYATGPLLKFQI     
                     MRLLLLLLMAASTVVWSEASANLGGVPSKRLKMQYATGPLLKFQI     
gi|408541634|gb49937 aactccccaggtaggtaggtgacgggcaaataactgagcccatca     
                     tgtttttttccccttggacccatggtcgagtataaccgcttatat     
                     ggtggtcggggcagcgcgcgctgccgccgaagggccgcgggacgt     


SPP00000116_1.0   46                           VSXGYRRVFEEYMRVISQRYPDI 
                                               VSXGYRRVFEEYMRVISQRYPDI 
                                C:C[tgt]       VSXGYRRVFEEYMRVISQRYPDI 
gi|408541634|gb50072 TGGTGAGTG  Intron 1   CAGTgttgtacgtggtacgaacctcga 
                       <2-----[50074:67867]-2> tcggaggttaaatgttgagacat 
                                               tcagtgggtggcggttcggcacc 


SPP00000116_1.0   70 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
gi|408541634|gb67938 cagggatccccatAGGTAAGCA  Intron 2   CAGAcagttttgta 
                     gtagaaatcacta  <2-----[67979:68338]-2> atccttctta 
                     ctaaatcctaaat                          caatcgacca 


SPP00000116_1.0   94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
gi|408541634|gb68370 tgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgttttctcgattccgggtaatg                  


SPP00000116_1.0  126                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
gi|408541634|gb68466 GTATGTA  Intron 3   TAGgtgtaagtttaaaagactataggtga 
                     <0-----[68466:70345]-0>tacgttttttgattaaagtccgctat 
                                            ctatggtccgccgtgcgtgcatatga 


SPP00000116_1.0  152 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
gi|408541634|gb70424 ataGGTGGGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[70434:72944]-1>  tctgcatacgatcctaatta 
                     tat                          gtagtggatcctacgagtta 


SPP00000116_1.0  176 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDS+PHHRS                              
                     ILDNEMKLNVHMDSLPHHRS                              
gi|408541634|gb73007 acgagaacagcagtccccct                              
                     ttaaatatatatactcaagc                              
                     ttctaggctgtgtacattaa                              


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>gi|408541634|gb|JH947298.1|:subseq(7325821,123066).pep
MRLLLLLLMAASTVVWSEASANLGGVPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMR
VISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQW
GQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNE
MKLNVHMDSLPHHRS
//
>gi|408541634|gb|JH947298.1|:subseq(7325821,123066).[49937:73066].sp
ATGAGGCTTTTGCTGCTTCTCCTGATGGCGGCGTCCACAGTGGTCTGGAGCGAGGCCTCG
GCCAATCTGGGCGGCGTGCCCAGCAAGAGATTAAAGATGCAGTACGCCACGGGCCCGCTG
CTGAAATTCCAGATTTGTGTTTCCTGAGGGTATAGGCGGGTGTTTGAGGAGTACATGCGG
GTTATTAGCCAGCGGTACCCAGACATCCGCATTGAAGGAGAAAATTACCTCCCTCAACCA
ATATATAGACACATAGCATCTTTCTTGTCAGTCTTCAAATTAGTATTAATAGGCTTAATA
ATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGG
GGTCAAGAAAATAAGGTCTATGCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAG
AACCAGTGTATGTCCACAGGTGCATTTGAGATAACTTTAAATGATGTGCCTGTATGGTCT
AAGCTGGAATCTGGCCACCTTCCATCCATGCAACAGCTTGTTCAAATTCTTGACAATGAA
ATGAAGCTCAATGTGCATATGGATTCACTCCCACATCATCGATCA
//
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	match	49937	73066	380.43	+	.	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	cds	49937	50073	0.00	+	0	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	intron	50074	67867	0.00	+	.	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	cds	67868	67978	0.00	+	1	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	intron	67979	68338	0.00	+	.	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	cds	68339	68465	0.00	+	1	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	intron	68466	70345	0.00	+	.	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	cds	70346	70433	0.00	+	0	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	intron	70434	72944	0.00	+	.	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
gi|408541634|gb|JH947298.1|:subseq(7325821,123066)	GeneWise	cds	72945	73066	0.00	+	2	gi|408541634|gb|JH947298.1|:subseq(7325821,123066)-genewise-prediction-1
//
