
genewise output
Score 253.33 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000115_1.0    2 DRDEEPLSARPALETESLRFLHVT                          
                     +RD E L ARPALETE LRFLHVT                          
                     ERDGERLLARPALETEGLRFLHVT          V:V[gtg]        
gi|408541484|gb50000 gcgggcccgccgcgaggcctccgaGGTGAGTG  Intron 1        
                     agagagttcgcctacagtgttatc <1-----[50073:50523]     
                     agtgaggccaggggcaggccgccc                          


SPP00000115_1.0   26      GSLLASYGWYILFSCILLYIVIQRLSLRLRALRQRQLDQAETVL 
                          G+LLASYGWYI+ S I+L + +Q+LS RLR LRQRQ   +   + 
                          GALLASYGWYIVVSVIVLVVAVQKLSTRLRVLRQRQRSISAAPV 
gi|408541484|gb50521 CAGTGggccgatgttaggagagcggggcactacccgtccaccaaaggcg 
                     -1>  gcttcgaggatttgttttttctaatccgtgttgagaggtgccct 
                          ccggcttcgccccccccccggggacctggacggggggtctgccg 


SPP00000115_1.0   71                           PDVVVKRQEALAAARLRMQEDLN 
                                               PD VVK+QEALAAAR++MQE+LN 
                               E:E[gaa]        PDTVVKQQEALAAARMKMQEELN 
gi|408541484|gb50658 GGTCAGTG  Intron 2   TAGAAcgaggaccggtgggcaaacggta 
                      <1-----[50659:53912]-1>  cacttaaaactcccgtataaata 
                                               tttttgaaataatttgagaaaat 


SPP00000115_1.0   95 AQVEKHKEKLRQ                       LEEEKRRQKIEMWD 
                      Q EKHKEKLRQ                       LEEEKRRQKIEMWD 
                     VQAEKHKEKLRQ                       LEEEKRRQKIEMWD 
gi|408541484|gb53984 gcggacagacacGTATGGG  Intron 3   TAGcgggaaacaagatg 
                     tacaaaaaatga<0-----[54020:65013]-0>taaaaggaatatga 
                     gatagtgagaag                       taaagaaggtaggc 


SPP00000115_1.0  121 SMQEGRSYKRNSGRPQ                       EEDGPGPSTS 
                     SMQEG+SYK N+ +PQ                       EE+  GPSTS 
                     SMQEGKSYKGNTKKPQ                       EENNSGPSTS 
gi|408541484|gb65056 aacggaatagaaaaccGTGCCTG  Intron 4   CAGggaatgctat 
                     gtaagagaagacaaca<0-----[65104:65196]-0>aaaacgcccc 
                     cgaaaaccaatcagtg                       agtctgttaa 


SPP00000115_1.0  147 SVIPKGKSDKKPLRGG                          YNPLTGE 
                     S+ PK K D+KPLRGG                          YNPL+GE 
                     SLPPKHKPDRKPLRGG          G:G[ggt]        YNPLSGE 
gi|408541484|gb65227 tcccacacgaactcggGGTAAGTG  Intron 5   CAGGTtacctgg 
                     ctccaaacagactggg <1-----[65276:68029]-1>  aactcga 
                     atcgatatcagagtat                          cctgtga 


SPP00000115_1.0  171 GGGTCSWRPGRRGPSSGG                                
                     G GTCSWRPGRRGPS+GG                                
                     GSGTCSWRPGRRGPSTGG                                
gi|408541484|gb68053 gagatttacgcagctagg                                
                     gggcgcggcggggcccgg                                
                     accgccggtacacaatta                                


//
Making a V in phase 1 intron
Making a E in phase 1 intron
Making a G in phase 1 intron
>gi|408541484|gb|JH947448.1|:subseq(2093154,118073).pep
ERDGERLLARPALETEGLRFLHVTVGALLASYGWYIVVSVIVLVVAVQKLSTRLRVLRQR
QRSISAAPVEPDTVVKQQEALAAARMKMQEELNVQAEKHKEKLRQLEEEKRRQKIEMWDS
MQEGKSYKGNTKKPQEENNSGPSTSSLPPKHKPDRKPLRGGGYNPLSGEGSGTCSWRPGR
RGPSTGG
//
>gi|408541484|gb|JH947448.1|:subseq(2093154,118073).[50000:68106].sp
GAACGGGATGGGGAACGGCTGCTCGCCCGACCGGCGCTGGAGACCGAAGGGCTGCGCTTC
CTGCACGTCACCGTGGGCGCCCTGCTGGCCAGTTATGGCTGGTACATCGTCGTCAGCGTC
ATCGTCCTCGTCGTGGCGGTGCAGAAACTCTCCACTCGGCTGCGAGTCTTGCGGCAGAGG
CAGCGGAGTATCAGTGCGGCCCCCGTGGAACCTGATACTGTTGTTAAGCAACAAGAAGCT
TTAGCAGCTGCTCGTATGAAAATGCAAGAAGAATTAAATGTGCAAGCTGAAAAGCATAAG
GAAAAGCTAAGACAGCTTGAAGAAGAAAAGAGAAGACAGAAGATTGAAATGTGGGACAGC
ATGCAAGAAGGAAAAAGCTACAAAGGAAATACCAAAAAGCCTCAGGAAGAGAATAACTCT
GGGCCTTCTACATCATCACTTCCCCCGAAACATAAACCTGACAGAAAGCCATTGCGTGGA
GGTGGTTACAACCCTCTGTCTGGGGAAGGAAGCGGCACGTGCTCCTGGAGGCCTGGACGC
AGAGGCCCATCAACTGGTGGA
//
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	match	50000	68106	253.33	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	50000	50072	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	intron	50073	50523	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	50524	50658	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	intron	50659	53912	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	53913	54019	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	intron	54020	65013	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	65014	65103	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	intron	65104	65196	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	65197	65275	0.00	+	0	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	intron	65276	68029	0.00	+	.	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
gi|408541484|gb|JH947448.1|:subseq(2093154,118073)	GeneWise	cds	68030	68106	0.00	+	2	gi|408541484|gb|JH947448.1|:subseq(2093154,118073)-genewise-prediction-1
//
