Command line: [exonerate -m p2g --showtargetgff -q SelW2 -t gi|511782577|gb|CM001957.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SelW2 
        Target: gi|511782577|gb|CM001957.1|:subseq(66333657,200961) Chlorocebus sabaeus isolate 1994-021 chromosome 16, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 546
   Query range: 0 -> 114
  Target range: 99999 -> 100961

      1 : AsnGlyGluProGlyGlnThrSerValAlaProLeuProGlyLysValGluProGlyS :     20
          !:!||||||||||||||||||||||||||||||! !|||! !:!!|||||||||||||
          SerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGlyS
 100000 : AGCGGGGAGCCGGGGCAGACGTCCGTAGCGCCCCCTCCCGAGGAGGTCGAGCCGGGGA : 100057

     21 : erGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>  :     29
          ||||||||||||||:!!|||||||||{||}            113 bp          
          erGlyValArgIleMetValGluTyr{Cy}++                         +
 100058 : GTGGGGTCCGCATCATGGTGGAGTAC{TG}gt.........................a : 100197

     30 :  {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGlu :     47
           {|}||||||||||||||||||||||||||||||||||||||||||||||||||||||
          +{s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGlu
 100198 : g{T}GAACCCTGCGGCTTCGAGGCGACCTACCTGGAGCTGGCCAGTGCTGTGAAGGAG : 100251

     48 : GlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target :     62
          ||||||||||||||||||||||||||||||||||||||||||{|}            4
          GlnTyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++           
 100252 : CAGTATCCGGGCATCGAGATCGAGTCGCGCCTGGGGGGCACA{G}gt........... : 100299

     63 :  Intron 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSe :     75
          21 bp           {||}||||||||||||||||||||||||||||||||||||||
                        ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSe
 100300 : ..............ag{GC}GCCTTTGAGATAGAGATAAATGGACAGCTGGTGTTCTC : 100756

     76 : rLysLeuGluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron  :     88
          |||||||||||||||||||||||||||||||||||||            86 bp    
          rLysLeuGluAsnGlyGlyPheProTyrGluLysAsp++                   
 100757 : CAAGCTGGAGAATGGGGGCTTTCCCTATGAGAAAGATgt................... : 100797

     89 : 3 >>>>  LeuIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIl :    104
                  |||||||||||||||||||||||||||!!.||||||||||||||||||||
                ++LeuIleGluAlaIleArgArgAlaSerLysGlyGluProLeuGluLysIl
 100798 : ......agCTCATTGAGGCCATCCGAAGAGCCAGTAAAGGAGAACCCCTAGAAAAGAT : 100929

    105 : eThrAsnSerArgProProCysIleIleLeu :    114
          |||||||||||||||||||||||||||||||
          eThrAsnSerArgProProCysIleIleLeu
 100930 : CACCAACAGCCGTCCTCCCTGCATCATCCTG : 100961

vulgar: SelW2 0 114 . gi|511782577|gb|CM001957.1|:subseq(66333657,200961) 99999 100961 + 546 M 28 84 S 0 2 5 0 2 I 0 109 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 417 3 0 2 S 1 2 M 25 75 5 0 2 I 0 82 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-12-03
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	gene	100000	100961	546	+	.	gene_id 1 ; sequence SelW2 ; gene_orientation +
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	cds	100000	100085	.	+	.	
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	exon	100000	100085	.	+	.	insertions 0 ; deletions 0
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice5	100086	100087	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	intron	100086	100198	.	+	.	intron_id 1
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice3	100197	100198	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	cds	100199	100296	.	+	.	
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	exon	100199	100296	.	+	.	insertions 0 ; deletions 0
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice5	100297	100298	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	intron	100297	100717	.	+	.	intron_id 2
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice3	100716	100717	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	cds	100718	100794	.	+	.	
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	exon	100718	100794	.	+	.	insertions 0 ; deletions 0
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice5	100795	100796	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	intron	100795	100880	.	+	.	intron_id 3
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	splice3	100879	100880	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	cds	100881	100961	.	+	.	
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	exon	100881	100961	.	+	.	insertions 0 ; deletions 0
gi|511782577|gb|CM001957.1|:subseq(66333657,200961)	exonerate:protein2genome:local	similarity	100000	100961	546	+	.	alignment_id 1 ; Query SelW2 ; Align 100000 1 84 ; Align 100200 30 96 ; Align 100720 63 75 ; Align 100881 88 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis