Output_id:  SelW.3.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782587|gb|CM001946.1|
-Program        genewise
-Query name     ref|NP_001108484.1| selenoprotein W, 1 [Canis lupus familiaris]
-Query range    1-87       length:87    coverage: 1.0
-Profile range  169-433    length:494   coverage: 0.54    sec_positions: [288, 291]
-ASI:           0.253     (ignoring gaps: 0.286)
-AWSIc:         0.47     Z-score: -0.536
-AWSIw:         0.4752     Z-score: -0.671
-State          kept

------- alignment -------
Query   MALAVRVVYU <---Intron---> GAUGYKSK <---Intron---> YLQLKKKLEDEFPGCLDI <---Intron---> CGEGTPQATGFFEVTV
        |||||||||  <   1948nt   > |||||||| <   114nt    > |||||||||||||| ||| <   171nt    > |||||||||||||| |
Target  MALAVRVVYC                GAUGYKSK                YLQLKKKLEDEFPGRLDI                CGEGTPQATGFFEVMV
        agcggcggtt                ggtgtata                tcccaaatgggtcgccga                tgggaccgagttggag
        tctctgttag   gt     ag    gcggaaca   gt     ag    atataaataaatcggtat   gt     ag    ggagccaccgttattt
        gtccgactt                tcgaccgcg                ttgcgggaatgtcccgcc                ccgatcgccgctaaga
                 *                  *                                                                       

Query   AGKLVHSKK <---Intron---> RGDGYVDTESKFLRLVAAIKTALAQG
        ||||/|||| <   107nt    > /||||||||||||/|||||| |||||
Target  AGKLIHSKK                KGDGYVDTESKFLKLVAAIKAALAQG
        ggatactaa                agggtggagaatcacgggaaggtgcg
        cgattacaa   gt     ag    agagatacagattattcctacctcag
        cgggtctgg                actccgcaacgtggggcccaccgtgc
                                                           
------- positions -------
Exon 1    41083343     41083371
Exon 2    41085320     41085344
Exon 3    41085459     41085512
Exon 4    41085684     41085758
Exon 5    41085866     41085943

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *