Command line: [exonerate -m p2g --showtargetgff -q selw.1.fa.U_to_X -t gi|511782587|gb|CM001946.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human (Homo sapiens) 
        Target: gi|511782587|gb|CM001946.1|:subseq(41035684,100074) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 349
   Query range: 0 -> 87
  Target range: 47658 -> 50259

     1 : MetAlaLeuAlaValArgValValTyr{Cy}  >>>> Target Intron 1 >>>>   :    10
         |||||||||||||||||||||||||||{||}           2062 bp           
         MetAlaLeuAlaValArgValValTyr{Cy}++                         -+
 47659 : ATGGCTCTCGCCGTGCGAGTCGTTTAT{TG}gt.........................tg : 49748

    11 : {s}GlyAlaUnkGlyTyrLysSerLysTyrLeuGlnLeuLysLysLysLeuGluAspGlu :    29
         {|} !!! !   !.!   :::! !:!!|||||||||||||||||||||||||||||||||
         {s}CysAspLeuAlaProArgPheGlnTyrLeuGlnLeuLysLysLysLeuGluAspGlu
 49749 : {C}TGTGACCTCGCACCGCGTTTTCAGTATCTTCAGCTCAAGAAGAAGTTAGAAGATGAG : 49805

    30 : PheProGlyArgLeuAspIle  >>>> Target Intron 2 >>>>  CysGlyGluG :    40
         |||||||||||||||||||||            171 bp           ||||||||||
         PheProGlyArgLeuAspIle++                         ++CysGlyGluG
 49806 : TTTCCCGGCCGCCTGGACATCgt.........................agTGCGGCGAGG : 50009

    41 : lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuIleHisSerL :    60
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lyThrProGlnAlaThrGlyPhePheGluValMetValAlaGlyLysLeuIleHisSerL
 50010 : GAACTCCCCAGGCCACCGGGTTCTTTGAAGTAATGGTAGCCGGGAAGTTGATTCACTCTA : 50069

    61 : ysLys  >>>> Target Intron 3 >>>>  LysGlyAspGlyTyrValAspThrGl :    70
         |||||            107 bp           ||||||||||||||||||||||||||
         ysLys++                         ++LysGlyAspGlyTyrValAspThrGl
 50070 : AGAAGgt.........................agAAAGGCGATGGCTACGTGGACACAGA : 50206

    71 : uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly :    87
         ||||||||||||||||||||||||||||||||||||||||||||||||||||
         uSerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly
 50207 : AAGCAAGTTTCTGAAGCTGGTGGCCGCCATCAAAGCCGCCTTGGCTCAGGGC : 50259

vulgar: SPP00000124_2.0 0 87 . gi|511782587|gb|CM001946.1|:subseq(41035684,100074) 47658 50259 + 349 M 9 27 S 0 2 5 0 2 I 0 2058 3 0 2 S 1 1 M 26 78 5 0 2 I 0 167 3 0 2 M 25 75 5 0 2 I 0 103 3 0 2 M 26 78
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	gene	47659	50259	349	+	.	gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation +
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	cds	47659	47687	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	exon	47659	47687	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice5	47688	47689	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	intron	47688	49749	.	+	.	intron_id 1
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice3	49748	49749	.	+	.	intron_id 0 ; splice_site "TG"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	cds	49750	49828	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	exon	49750	49828	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice5	49829	49830	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	intron	49829	49999	.	+	.	intron_id 2
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice3	49998	49999	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	cds	50000	50074	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	exon	50000	50074	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice5	50075	50076	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	intron	50075	50181	.	+	.	intron_id 3
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	splice3	50180	50181	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	cds	50182	50259	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	exon	50182	50259	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(41035684,100074)	exonerate:protein2genome:local	similarity	47659	50259	349	+	.	alignment_id 1 ; Query SPP00000124_2.0 ; Align 47659 1 27 ; Align 49751 11 78 ; Align 50000 37 75 ; Align 50182 62 78
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis