Command line: [exonerate -m p2g --showtargetgff -q selw.1.fa.U_to_X -t gi|511782573|gb|CM001961.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000124_2.0 # Protein # Selenoprotein W1 (SelW1) # Human (Homo sapiens) 
        Target: gi|511782573|gb|CM001961.1|:subseq(101691172,100134) Chlorocebus sabaeus isolate 1994-021 chromosome 20, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 268
   Query range: 1 -> 87
  Target range: 49587 -> 50182

     2 : AlaLeuAlaValArgValValTyrCysGlyAlaUnkGlyTyrLysSerLysTyrLeuGln :    21
         |||:!!|||:!!  !  !  !!  |||||||||   ||||||||||||||||||||||||
         AlaMetAlaLeuValSerCysLeuCysGlyAla***GlyTyrLysSerLysTyrLeuGln
 49588 : GCCATGGCTCTCGTGAGTTGTTTATGTGGCGCTTGAGGCTACAAGTCCAAGTATCTTCAG : 49645

    22 : LeuLysLysLysLeuGlu{A}  >>>> Target Intron 1 >>>>  {sp}GluPhe :    30
         |||||||||:!!||||||{|}            337 bp           {||}||| !!
         LeuLysLysGlnLeuGlu{A}-+                         ++{sp}GluVal
 49646 : CTCAAGAAGCAGTTAGAA{G}at.........................ag{AT}GAGGTC : 50009

    31 : ProGlyArgLeuAspIleCysGlyGluGlyThrProGlnAlaThrGlyPhePheGluVal :    50
         ! ! !!  !||||||||||||.!!:!! !!||||||||||||||||||||||||||||||
         LeuTrpAlaLeuAspIleCysSerLysArgThrProGlnAlaThrGlyPhePheGluVal
 50010 : CTCTGGGCTTTGGATATCTGCAGCAAGAGAACTCCCCAGGCCACTGGATTCTTTGAAGTA : 50069

    51 : MetValAlaGlyLysLeuIleHisSerLysLysLysGlyAspGlyTyrValAspThrGlu :    70
         |||||||||||||||||||||||||||||||||:!!! !|||||||||||||||||||||
         MetValAlaGlyLysLeuIleHisSerLysLysGluAspAspGlyTyrValAspThrGlu
 50070 : ATGGTAGCCGGGAAGTTGATTCACTCTAAGAAGGAAGATGATGGCTACGTGGACACAGAA : 50129

    71 : SerLysPheLeuLysLeuValAlaAlaIleLysAlaAlaLeuAlaGlnGly :    87
         !:!! !! !|||||||||||||||||||||||||||||||||.!!||||||
         AsnThrCysLeuLysLeuValAlaAlaIleLysAlaAlaLeuThrGlnGly
 50130 : AACACGTGTCTGAAGCTGGTGGCCGCCATCAAAGCCGCCTTGACTCAGGGC : 50182

vulgar: SPP00000124_2.0 1 87 . gi|511782573|gb|CM001961.1|:subseq(101691172,100134) 49587 50182 + 268 M 26 78 S 0 1 5 0 2 I 0 333 3 0 2 S 1 2 M 59 177
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	gene	49588	50182	268	+	.	gene_id 1 ; sequence SPP00000124_2.0 ; gene_orientation +
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	cds	49588	49666	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	exon	49588	49666	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	splice5	49667	49668	.	+	.	intron_id 1 ; splice_site "AT"
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	intron	49667	50003	.	+	.	intron_id 1
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	splice3	50002	50003	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	cds	50004	50182	.	+	.	
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	exon	50004	50182	.	+	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(101691172,100134)	exonerate:protein2genome:local	similarity	49588	50182	268	+	.	alignment_id 1 ; Query SPP00000124_2.0 ; Align 49588 2 78 ; Align 50006 29 177
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis