Command line: [exonerate -m p2g --showtargetgff -q SelI.aa.fa.U_to_X -t gi|511782579|gb|CM001955.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000074_2.0 # Protein # Selenoprotein I (SelI) # Human (Homo sapiens) 
        Target: gi|511782579|gb|CM001955.1|:subseq(81208461,125191) Chlorocebus sabaeus isolate 1994-021 chromosome 14, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2020
   Query range: 0 -> 397
  Target range: 95014 -> 49999

     1 : MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys  > :    20
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
         MetAlaGlyTyrGluTyrValSerProGluGlnLeuAlaGlyPheAspLysTyrLys++ 
 95014 : ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGgt. : 94955

    21 : >>> Target Intron 1 >>>>  TyrSerAlaValAspThrAsnProLeuSerLeuT :    31
                 19769 bp          ||||||||||||||||||||||||||||||||||
                                 ++TyrSerAlaValAspThrAsnProLeuSerLeuT
 94954 : ........................agTACAGTGCTGTGGATACCAATCCACTTTCTCTGT : 75155

    32 : yrValMetHisProPheTrpAsnThrIleValLys  >>>> Target Intron 2 >> :    43
         |||||||||||||||||||||||||||||||||||            433 bp       
         yrValMetHisProPheTrpAsnThrIleValLys++                       
 75154 : ATGTCATGCATCCATTTTGGAACACTATAGTAAAGgt....................... : 75117

    44 : >>  ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuVa :    61
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++ValPheProThrTrpLeuAlaProAsnLeuIleThrPheSerGlyPheLeuLeuVa
 75116 : ..agGTATTTCCTACTTGGCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTGGT : 74632

    62 : lValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSer{A}  >>> :    79
         ||||||||||||||||||||||||||||||||||||||||||||||||||||{|}     
         lValPheAsnPheLeuLeuMetAlaTyrPheAspProAspPheTyrAlaSer{A}++   
 74631 : TGTATTCAATTTTCTACTAATGGCATACTTTGATCCTGACTTCTATGCCTCA{G}gt... : 74575

    80 : > Target Intron 3 >>>>  {la}ProGlyHisLysHisValProAspTrpValTr :    90
               2573 bp           {||}||||||||||||||||||||||||||||||||
                               ++{la}ProGlyHisLysHisValProAspTrpValTr
 74574 : ......................ag{CA}CCAGGTCACAAGCATGTGCCTGACTGGGTTTG : 71972

    91 : pIleValValGlyIleLeuAsnPheValAlaTyrThrLeu{A}  >>>> Target Int :   104
         ||||||||||||||||||||||||||||||||||||||||{|}           4443 b
         pIleValValGlyIleLeuAsnPheValAlaTyrThrLeu{A}++               
 71971 : GATTGTAGTGGGCATCCTCAACTTCGTAGCCTACACTCTA{G}gt............... : 71927

   105 : ron 4 >>>>  {sp}GlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrPr :   119
         p           {||}||||||||||||||||||||||||||||||||||||||||||||
                   ++{sp}GlyValAspGlyLysGlnAlaArgArgThrAsnSerSerThrPr
 71926 : ..........ag{AT}GGTGTGGACGGAAAGCAAGCTCGCAGAACCAATTCTAGCACTCC : 67442

   120 : oLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCysValTyrPheValValTh :   139
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         oLeuGlyGluLeuPheAspHisGlyLeuAspSerTrpSerCysValTyrPheValValTh
 67441 : CTTAGGGGAGCTTTTTGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAAC : 67382

   140 : rValTyrSerIlePheGlyArgGlySerThrGlyValSerValPheValLeuTyrLeuLe :   159
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         rValTyrSerIlePheGlyArgGlySerThrGlyValSerValPheValLeuTyrLeuLe
 67381 : TGTTTATTCCATCTTTGGAAGAGGATCGACTGGTGTCAGTGTTTTTGTTCTTTATCTCCT : 67322

   160 : uLeuTrpValValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIl :   179
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         uLeuTrpValValLeuPheSerPheIleLeuSerHisTrpGluLysTyrAsnThrGlyIl
 67321 : GCTATGGGTAGTTTTGTTTTCTTTCATCCTGTCCCACTGGGAAAAGTATAACACAGGGAT : 67262

   180 : eLeuPheLeuProTrpGlyTyrAspIleSerGlnVal  >>>> Target Intron 5  :   192
         |||||||||||||||||||||||||||||||||||||           1836 bp     
         eLeuPheLeuProTrpGlyTyrAspIleSerGlnVal++                     
 67261 : TCTTTTCCTGCCATGGGGATATGACATTAGCCAGGTGgt..................... : 67221

   193 : >>>>  ThrIleSerPheValTyrIleValThrAlaValValGlyValGluAlaTrpTyr :   209
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||
             ++ThrIleSerPheValTyrIleValThrAlaValValGlyValGluAlaTrpTyr
 67220 : ....agACTATTTCTTTTGTCTACATAGTGACTGCGGTTGTGGGAGTTGAGGCCTGGTAT : 65336

   210 : GluProPheLeuPheAsnPheLeuTyrArgAspLeuPheThrAlaMetIleIle{G}  > :   228
         ||||||||||||||||||||||||||||||||||||||||||:!!|||||||||{|}   
         GluProPheLeuPheAsnPheLeuTyrArgAspLeuPheThrSerMetIleIle{G}++ 
 65335 : GAACCTTTCCTGTTTAATTTCTTATATAGAGACCTATTCACTTCAATGATTATT{G}gt. : 65276

   229 : >>> Target Intron 6 >>>>  {ly}CysAlaLeuCysValThrLeuProMetSer :   238
                 9415 bp           {||}||||||||||||||||||||||||||||||
                                 ++{ly}CysAlaLeuCysValThrLeuProMetSer
 65275 : ........................ag{GT}TGTGCGTTGTGTGTGACTCTTCCAATGAGT : 55834

   239 : LeuLeuAsnPhePhe{Ar}  >>>> Target Intron 7 >>>>  {g}SerTyrLys :   247
         |||||||||||||||{||}           1635 bp           {|}|||||||||
         LeuLeuAsnPhePhe{Ar}++                         ++{g}SerTyrLys
 55833 : TTACTAAACTTTTTC{AG}gt.........................ag{A}AGCTATAAA : 54172

   248 : AsnAsnThrLeuLysLeuAsnSerValTyrGluAlaMetValProLeuPheSerProCys :   267
         |||||||||||||||! !||||||||||||||||||:!!|||||||||||||||||||||
         AsnAsnThrLeuLysHisAsnSerValTyrGluAlaValValProLeuPheSerProCys
 54171 : AATAACACCTTGAAACACAATTCAGTCTATGAAGCTGTGGTTCCCTTATTTTCTCCATGC : 54112

   268 : LeuLeuPheIleLeuSerThrAlaTrpIleLeuTrpSerProSerAspIleLeuGluLeu :   287
         |||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||||
         LeuLeuPheIleLeuSerThrValTrpIleLeuTrpSerProSerAspIleLeuGluLeu
 54111 : TTGCTGTTCATTTTGTCTACAGTGTGGATCCTTTGGTCACCTTCAGATATTTTAGAGCTA : 54052

   288 : HisProArgValPheTyrPheMetValGlyThrAlaPheAlaAsnSerThr  >>>> Ta :   305
         |||||||||||||||||||||||||||||||||||||||||||||||||||         
         HisProArgValPheTyrPheMetValGlyThrAlaPheAlaAsnSerThr++       
 54051 : CATCCTAGAGTATTCTACTTTATGGTTGGAACAGCCTTTGCCAACAGCACAgt....... : 53996

   306 : rget Intron 8 >>>>  CysGlnLeuIleValCysGlnMetSerSerThrArgCysP :   318
           1204 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++CysGlnLeuIleValCysGlnMetSerSerThrArgCysP
 53995 : ..................agTGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTC : 52755

   319 : roThrLeuAsnTrpLeuLeuValProLeuPheLeuValValLeuValValAsnLeuGlyV :   338
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roThrLeuAsnTrpLeuLeuValProLeuPheLeuValValLeuValValAsnLeuGlyV
 52754 : CAACTTTGAATTGGTTGCTGGTTCCTCTCTTCTTGGTTGTCTTAGTGGTAAACCTAGGAG : 52695

   339 : alAlaSerTyrValGluSerIleLeuLeuTyrThrLeuThrThrAlaPheThrLeuAlaH :   358
         |||||||||||:!!||||||||||||||||||||||||||||||||||||||||||||||
         alAlaSerTyrIleGluSerIleLeuLeuTyrThrLeuThrThrAlaPheThrLeuAlaH
 52694 : TAGCCTCTTACATTGAGAGCATTCTCCTGTATACATTAACAACGGCTTTTACTCTGGCCC : 52635

   359 : isIleHisTyrGlyValArgVal  >>>> Target Intron 9 >>>>  ValLysGl :   368
         |||||||||||||||||||||||           2516 bp           ||||||||
         isIleHisTyrGlyValArgVal++                         ++ValLysGl
 52634 : ACATCCATTATGGAGTACGAGTGgt.........................agGTAAAGCA : 50089

   369 : nLeuSerSerHisPheGlnIleTyrProPheSerLeuArgLysProAsnSerAspUnkLe :   388
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||
         nLeuSerSerHisPheGlnIleTyrProPheSerLeuArgLysProAsnSerAsp***Le
 50088 : GCTGAGCAGCCATTTTCAGATTTACCCCTTCTCATTGAGGAAACCAAACTCAGATTGACT : 50029

   389 : uGlyMetGluGluLysAsnIleGlyLeu :   397
         ||||||||||||||||||||||||||||
         uGlyMetGluGluLysAsnIleGlyLeu
 50028 : AGGAATGGAAGAAAAGAATATTGGCCTG : 50000

vulgar: SPP00000074_2.0 0 397 . gi|511782579|gb|CM001955.1|:subseq(81208461,125191) 95014 49999 - 2020 M 19 57 5 0 2 I 0 19765 3 0 2 M 23 69 5 0 2 I 0 429 3 0 2 M 36 108 S 0 1 5 0 2 I 0 2569 3 0 2 S 1 2 M 24 72 S 0 1 5 0 2 I 0 4439 3 0 2 S 1 2 M 87 261 5 0 2 I 0 1832 3 0 2 M 36 108 S 0 1 5 0 2 I 0 9411 3 0 2 S 1 2 M 15 45 S 0 2 5 0 2 I 0 1631 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1200 3 0 2 M 61 183 5 0 2 I 0 2512 3 0 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	gene	50000	95014	2020	-	.	gene_id 1 ; sequence SPP00000074_2.0 ; gene_orientation +
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	94958	95014	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	94958	95014	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	94956	94957	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	75189	94957	.	-	.	intron_id 1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	75189	75190	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	75120	75188	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	75120	75188	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	75118	75119	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	74687	75119	.	-	.	intron_id 2
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	74687	74688	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	74578	74686	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	74578	74686	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	74576	74577	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	72005	74577	.	-	.	intron_id 3
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	72005	72006	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	71930	72004	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	71930	72004	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	71928	71929	.	-	.	intron_id 4 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	67487	71929	.	-	.	intron_id 4
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	67487	67488	.	-	.	intron_id 3 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	67224	67486	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	67224	67486	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	67222	67223	.	-	.	intron_id 5 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	65388	67223	.	-	.	intron_id 5
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	65388	65389	.	-	.	intron_id 4 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	65279	65387	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	65279	65387	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	65277	65278	.	-	.	intron_id 6 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	55864	65278	.	-	.	intron_id 6
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	55864	55865	.	-	.	intron_id 5 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	55815	55863	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	55815	55863	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	55813	55814	.	-	.	intron_id 7 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	54180	55814	.	-	.	intron_id 7
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	54180	54181	.	-	.	intron_id 6 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	53999	54179	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	53999	54179	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	53997	53998	.	-	.	intron_id 8 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	52795	53998	.	-	.	intron_id 8
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	52795	52796	.	-	.	intron_id 7 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	52612	52794	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	52612	52794	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice5	52610	52611	.	-	.	intron_id 9 ; splice_site "GT"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	intron	50096	52611	.	-	.	intron_id 9
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	splice3	50096	50097	.	-	.	intron_id 8 ; splice_site "AG"
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	cds	50000	50095	.	-	.	
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	exon	50000	50095	.	-	.	insertions 0 ; deletions 0
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	exonerate:protein2genome:local	similarity	50000	95014	2020	-	.	alignment_id 1 ; Query SPP00000074_2.0 ; Align 95015 1 57 ; Align 75189 20 69 ; Align 74687 43 108 ; Align 72003 80 72 ; Align 67485 105 261 ; Align 65388 192 108 ; Align 55862 229 45 ; Align 54179 245 180 ; Align 52795 305 183 ; Align 50096 366 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis