Output_id:  SelI.3.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782579|gb|CM001955.1|
-Program        genewise
-Query name     gi|207113144|ref|NP_001129035.1| selenoprotein I [Macaca mulatta]
-Query range    1-397      length:397   coverage: 1.0
-Profile range  1-398      length:404   coverage: 0.99    sec_position: [388]
-ASI:           0.9034     (ignoring gaps: 0.9055)
-AWSIc:         0.9717     Z-score: 0.943
-AWSIw:         0.9719     Z-score: 0.994
-State          kept

------- alignment -------
Query   MAGYEYVSPEQLAGFDKYK <---Intron---> YSAVDTNPLSLYVMHPFWNTIVK <---Intron---> VFPTWLAPNLITFSGFLLVVFNFLLM
        ||||||||||||||||||| <  19769nt   > ||||||||||||||||||||||| <   433nt    > ||||||||||||||||||||||||||
Target  MAGYEYVSPEQLAGFDKYK                YSAVDTNPLSLYVMHPFWNTIVK                VFPTWLAPNLITFSGFLLVVFNFLLM
        aggtgtgacgccggtgata                tagggaacctctgaccttaaaga                gtcatcgcacaattgtccggtatcca
        tcgaaatgcaatcgtaaaa   gt     ag    agctacactctattactgactta   gt     ag    ttccgtccattctcgttttttatttt
        gtccacgcggggtcttgcg                cttgtctattgtcgtatgctaag                atttgggctgatttctggtacttaag
                                                                                                            

Query   AYFDPDFYASA <---Intron---> PGHKHVPDWVWIVVGILNFVAYTLD <---Intron---> GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        ||||||||||| <   2573nt   > ||||||||||||||||||||||||| <   4443nt   > ||||||||||||||||||||||||||||||||
Target  AYFDPDFYASA                PGHKHVPDWVWIVVGILNFVAYTLD                GVDGKQARRTNSSTPLGELFDHGLDSWSCVYF
        gttgcgttgtg                cgcacgcgtgtagggacatggtacg                ggggacgcaaataactggctgcgcgatttgtt
        catacatacc    gt     ag   ccgaaatcagtgtttgttattcact    gt     ag   agtagaacggcacgcctgattaagtaggcgtat
        actttcctca                aatcgtgtcgtgtagcccccaccta                ttgcagatcacttctcaggttttcgttgattct
                                                                                                            

Query   VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV <---Intron---> TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1836nt   > |||||||||||||||||||||||||||||
Target  VVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWGYDISQV                TISFVYIVTAVVGVEAWYEPFLFNFLYRD
        ggagttatgagtaggagtgctccctggttttactctgataagactcctgtgaacg                aattgtagagggggggttgctctatttag
        ttctacttgggccgtgttttatttgttttctttcagaaaacgttttcggaatgat   gt     ag    ctcttattccttgtacgaactttattaga
        tatttcctaaagttcttttttcgagatgttccgccgagtcagttcgagatctcgg                ttttccagtgtgatgcgtatcgttcatac
                                                                                                            

Query   LFTSMIIG <---Intron---> CALCVTLPMSLLNFFR <---Intron---> SYKNNTLKHNSVYEAVVPLFSPCLLFILSTAWILWSPSDILELH
        |||||||| <   9415nt   > |||||||||||||||| <   1635nt   > |||||||||||||||||||||||||||||| |||||||||||||
Target  LFTSMIIG                CALCVTLPMSLLNFFR                SYKNNTLKHNSVYEAVVPLFSPCLLFILSTVWILWSPSDILELH
        ctataaag                tgttgaccaatcatta                ataaaatacatgtggggctttcttctattagtacttctgatgcc
        ttccttt    gt     ag   ggctgtctctgttattg   gt     ag    gaaaactaaactaacttcttccgtttttcctgttgcccattata
        actagtt                ttggtgttagtaactc                actatccgactactatgtcattacggctgtaggctgatattagat
                                                                                                            

Query   PRVFYFMVGTAFANST <---Intron---> CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV <---In
        |||||||||||||||| <   1204nt   > |||||||||||||||||||||||||||||||||||||/||||||||||||||||||||||| <   25
Target  PRVFYFMVGTAFANST                CQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYIESILLYTLTTAFTLAHIHYGVRV       
        cagtttaggagtgaaa                tccagtcaaaactcatattcgccttggtggacgggttagaacctataagtacgcactggcg       
        cgttatttgcctcagc   gt     ag    gatttgatggcggcctagtttcttttttttatgtccatagtttactccctctcataagtgt   gt  
        taacctgtaactccca                tggttcagttcgtatgtgggttccgtcagacaaactctgctcgtaaagtttgcccttaaag       
                                                                                                            

Query   tron---> VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
        16nt   > ||||||||||||||||||||||||||||||||
Target           VKQLSSHFQIYPFSLRKPNSDULGMEEKNIGL
                 gaccaactcatctttaacatgtcgaggaaagc
           ag    taatggatatactctgacacagtgtaaaatgt
                 agggccttgtcccaggaacataaagaagttcg
                                      *          
------- positions -------
Exon 1    81303419     81303475
Exon 2    81283581     81283649
Exon 3    81283039     81283147
Exon 4    81280391     81280465
Exon 5    81275685     81275947
Exon 6    81273740     81273848
Exon 7    81264276     81264324
Exon 8    81262460     81262640
Exon 9    81261073     81261255
Exon 10   81258461     81258556

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *