genewise output
Score 21.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0  156 LYLLLWVVLFSFILSHWEKYNT                            
                     LYL   V+L +F+ SH+ K  T                            
                     LYLSYKVLLSAFLTSHYHKTGT                            
gi|511782579|gb49115 tttttagcttgtcaactcaaga                            
                     tatcaatttccttcgaaaacgc                            
                     atatcgatataccattttgtgt                            


//
>gi|511782579|gb|CM001955.1|:subseq(81208461,125191).pep
LYLSYKVLLSAFLTSHYHKTGT
//
>gi|511782579|gb|CM001955.1|:subseq(81208461,125191).[49115:49180].sp
TTATATTTATCTTACAAGGTACTTTTATCTGCATTCCTCACAAGTCATTATCATAAGACT
GGGACT
//
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	match	49115	49180	21.29	+	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	49115	49180	0.00	+	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
//

genewise output
Score 825.15 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000074_2.0    1 MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
                     MAGYEYVSPEQLAGFDKYK                       YSAVDTN 
gi|511782579|g-95014 aggtgtgacgccggtgataGTACCGC  Intron 1   CAGtagggaa 
                     tcgaaatgcaatcgtaaaa<0-----[94957:75189]-0>agctaca 
                     gtccacgcggggtcttgcg                       cttgtct 


SPP00000074_2.0   27 PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
                     PLSLYVMHPFWNTIVK                       VFPTWLAPNL 
gi|511782579|g-75167 cctctgaccttaaagaGTAAGAT  Intron 2   TAGgtcatcgcac 
                     ctctattactgactta<0-----[75119:74687]-0>ttccgtccat 
                     attgtcgtatgctaag                       atttgggctg 


SPP00000074_2.0   53 ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS                        
                     ITFSGFLLVVFNFLLMAYFDPDFYAS          A:A[gca]      
gi|511782579|g-74656 aattgtccggtatccagttgcgttgtGGTAAGAA  Intron 3      
                     tctcgttttttattttcatacatacc <1-----[74577:72005]   
                     atttctggtacttaagactttcctca                        


SPP00000074_2.0   79      PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
                          PGHKHVPDWVWIVVGILNFVAYTL                     
gi|511782579|g-72007 CAGCAcgcacgcgtgtagggacatggtac                     
                     -1>  cgaaatcagtgtttgttattcact                     
                          atcgtgtcgtgtagcccccaccta                     


SPP00000074_2.0  104                           GVDGKQARRTNSSTPLGELFDHG 
                                               GVDGKQARRTNSSTPLGELFDHG 
                               D:D[gat]        GVDGKQARRTNSSTPLGELFDHG 
gi|511782579|g-71930 GGTAAGGA  Intron 4   CAGATggggacgcaaataactggctgcg 
                      <1-----[71929:67487]-1>  gtagaacggcacgcctgattaag 
                                               tgcagatcacttctcaggttttc 


SPP00000074_2.0  128 LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
                     LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN 
gi|511782579|g-67415 cgatttgttggagttatgagtaggagtgctccctggttttactctgata 
                     taggcgtatttctacttgggccgtgttttatttgttttctttcagaaaa 
                     gttgattcttatttcctaaagttcttttttcgagatgttccgccgagtc 


SPP00000074_2.0  177 TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
                     TGILFLPWGYDISQV                       TISFVYIVTAV 
gi|511782579|g-67268 agactcctgtgaacgGTAAGTA  Intron 5   CAGaattgtagagg 
                     cgttttcggaatgat<0-----[67223:65388]-0>ctcttattcct 
                     agttcgagatctcgg                       ttttccagtgt 


SPP00000074_2.0  203 VGVEAWYEPFLFNFLYRDLFTAMII                         
                     VGVEAWYEPFLFNFLYRDLFT+MII                         
                     VGVEAWYEPFLFNFLYRDLFTSMII          G:G[ggt]       
gi|511782579|g-65354 gggggttgctctatttagctataaaGGTAAGAA  Intron 6       
                     tgtacgaactttattagattccttt <1-----[65278:55864]    
                     gatgcgtatcgttcatacactagtt                         


SPP00000074_2.0  228      CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF                          SYK 
                          CALCVTLPMSLLNFF           R:R[aga]       SYK 
gi|511782579|g-55866 TAGGTtgttgaccaatcattAGGTAAGTA  Intron 7   CAGAata 
                     -1>  gctgtctctgttatt  <2-----[55814:54180]-2> gaa 
                          tggtgttagtaactc                          cta 


SPP00000074_2.0  248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV 
                     NNTLK NSVYEA+VPLFSPCLLFILST WILWSPSDILELHPRVFYFMV 
                     NNTLKHNSVYEAVVPLFSPCLLFILSTVWILWSPSDILELHPRVFYFMV 
gi|511782579|g-54169 aaatacatgtggggctttcttctattagtacttctgatgcccagtttag 
                     aactaaactaacttcttccgtttttcctgttgcccattatacgttattt 
                     tccgactactatgtcattacggctgtaggctgatattagattaacctgt 


SPP00000074_2.0  297 GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
                     GTAFANST                       CQLIVCQMSSTRCPTLNW 
gi|511782579|g-54022 gagtgaaaGTAAGTT  Intron 8   CAGtccagtcaaaactcatat 
                     gcctcagc<0-----[53998:52795]-0>gatttgatggcggcctag 
                     aactccca                       tggttcagttcgtatgtg 


SPP00000074_2.0  323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGVASY+ESILLYTLTTAFTLAHIHYGVRV       
                     LLVPLFLVVLVVNLGVASYIESILLYTLTTAFTLAHIHYGVRV       
gi|511782579|g-52740 tcgccttggtggacgggttagaacctataagtacgcactggcg       
                     tttcttttttttatgtccatagtttactccctctcataagtgt       
                     ggttccgtcagacaaactctgctcgtaaagtttgcccttaaag       


SPP00000074_2.0  366                        VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
                                            VKQLSSHFQIYPFSLRKPNSDXLGME 
gi|511782579|g-52611 GTGAGTA  Intron 9   CAGgaccaactcatctttaacatgtcgag 
                     <0-----[52611:50096]-0>taatggatatactctgacacagtgta 
                                            agggccttgtcccaggaacataaaga 


SPP00000074_2.0  392 EKNIGL                                            
                     EKNIGL                                            
                     EKNIGL                                            
gi|511782579|g-50017 gaaagc                                            
                     aaatgt                                            
                     agttcg                                            


//
Making a A in phase 1 intron
Making a D in phase 1 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
>gi|511782579|gb|CM001955.1|:subseq(81208461,125191).pep
MAGYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLL
VVFNFLLMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPL
GELFDHGLDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL
FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTSMIIGCALCVTLPMSLL
NFFRSYKNNTLKHNSVYEAVVPLFSPCLLFILSTVWILWSPSDILELHPRVFYFMVGTAF
ANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYIESILLYTLTTAFTLAHIH
YGVRVVKQLSSHFQIYPFSLRKPNSDXLGMEEKNIGL
//
>gi|511782579|gb|CM001955.1|:subseq(81208461,125191).[95014:49998].sp
ATGGCTGGCTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGTAC
AGTGCTGTGGATACCAATCCACTTTCTCTGTATGTCATGCATCCATTTTGGAACACTATA
GTAAAGGTATTTCCTACTTGGCTGGCGCCCAATCTGATAACTTTTTCTGGCTTTCTGCTG
GTTGTATTCAATTTTCTACTAATGGCATACTTTGATCCTGACTTCTATGCCTCAGCACCA
GGTCACAAGCATGTGCCTGACTGGGTTTGGATTGTAGTGGGCATCCTCAACTTCGTAGCC
TACACTCTAGATGGTGTGGACGGAAAGCAAGCTCGCAGAACCAATTCTAGCACTCCCTTA
GGGGAGCTTTTTGATCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTAACTGTT
TATTCCATCTTTGGAAGAGGATCGACTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTA
TGGGTAGTTTTGTTTTCTTTCATCCTGTCCCACTGGGAAAAGTATAACACAGGGATTCTT
TTCCTGCCATGGGGATATGACATTAGCCAGGTGACTATTTCTTTTGTCTACATAGTGACT
GCGGTTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGAC
CTATTCACTTCAATGATTATTGGTTGTGCGTTGTGTGTGACTCTTCCAATGAGTTTACTA
AACTTTTTCAGAAGCTATAAAAATAACACCTTGAAACACAATTCAGTCTATGAAGCTGTG
GTTCCCTTATTTTCTCCATGCTTGCTGTTCATTTTGTCTACAGTGTGGATCCTTTGGTCA
CCTTCAGATATTTTAGAGCTACATCCTAGAGTATTCTACTTTATGGTTGGAACAGCCTTT
GCCAACAGCACATGTCAGCTGATTGTTTGCCAAATGAGTAGTACCCGGTGTCCAACTTTG
AATTGGTTGCTGGTTCCTCTCTTCTTGGTTGTCTTAGTGGTAAACCTAGGAGTAGCCTCT
TACATTGAGAGCATTCTCCTGTATACATTAACAACGGCTTTTACTCTGGCCCACATCCAT
TATGGAGTACGAGTGGTAAAGCAGCTGAGCAGCCATTTTCAGATTTACCCCTTCTCATTG
AGGAAACCAAACTCAGATTGACTAGGAATGGAAGAAAAGAATATTGGCCTG
//
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	match	95014	50000	825.15	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	95014	94958	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	94957	75189	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	75188	75120	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	75119	74687	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	74686	74578	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	74577	72005	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	72004	71930	0.00	-	2	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	71929	67487	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	67486	67224	0.00	-	2	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	67223	65388	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	65387	65279	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	65278	55864	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	55863	55815	0.00	-	2	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	55814	54180	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	54179	53999	0.00	-	1	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	53998	52795	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	52794	52612	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	intron	52611	50096	0.00	-	.	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
gi|511782579|gb|CM001955.1|:subseq(81208461,125191)	GeneWise	cds	50095	50000	0.00	-	0	gi|511782579|gb|CM001955.1|:subseq(81208461,125191)-genewise-prediction-1
//