Output_id:  eEFsec.3.homologue
----------  ------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782571|gb|CM001963.1|
-Program        genewise
-Query name     gi|134085617|ref|NP_001076933.1| eukaryotic elongation factor, selenocysteine-tRNA-specific [Bos taurus] gi|126920896|gb|AAI33604.1| EEFSEC protein [Bos taurus]
-Query range    1-589      length:589   coverage: 1.0
-Profile range  2-1276     length:1276  coverage: 1.0
-ASI:           0.2874     (ignoring gaps: 0.3873)
-AWSIc:         0.648     Z-score: 1.083
-AWSIw:         0.6541     Z-score: 1.385
-State          kept

------- alignment -------
Query   MAGRRVNVNVGVLGHIDSGKTALARALSTTASTAAFDKQPQSRERGITLDLGFSCFSVPLPAHLR---PAPGAGPEPEP---EPRLQVTLVDCPGHASLI
        |||||||||||||||||||||||||||||||||/|||||||||||||||||||||||||||| ||   |   | || ||   || |||||||||||||||
Target  MAGRRVNVNVGVLGHIDSGKTALARALSTTASTSAFDKQPQSRERGITLDLGFSCFSVPLPARLRSSLPEFQAAPEAEPEAGEPLLQVTLVDCPGHASLI
        aggccgagagggcgcagagaagcgcgcaaagtatgtgacccacgcgaacgcgtttttgcccgccctttcgtcggcgggcggggccccgacggtcgcgtca
        tcgggtatatgttgataggacctcgctgccccccctaaacaggaggtctatgtcgtctctccgtgcctcatacccacacacgacttatcttagcgacctt
        gaggatcgcgcggccccccgggggggaccacctcctcggggccgcccgacgcccccggggcgcgggtgcgcgagcgcgcgccgagtgcggcctcgccccc
                                                                                                            

Query   RTIIGG <---Intron---> AQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKTDLLPEGKKQAAIDRMTKKMQKTLESTK <---Intr
        |||||| <  92686nt   > ||||||||||||||||||||||||||||||||||||||||| ||| |||/|||/|/||||||||||/|| <  14749
Target  RTIIGG                AQIIDLMMLVIDVTKGMQTQSAECLVIGQIACQKLVVVLNKIDLLAEGKRQAAVDKMTKKMQKTLENTK         
        caaagg                gcaagcaacgaggaagacactggtcgagcagtcacgggcaaagctgggaacggggaaaaaacaacgaaa         
        gcttg    gt     ag   gcattattttttatcagtacaccagtttgatcgaatttttaatattcagagacctaatcaataactaaca   gt    
        gcccc                gcgcttggggcctgcggggcgagactgccgtccgggtgggcaaccataagagaattagcgagggcagcc          
                                                                                                            

Query   on---> FRGAPVIPVAAKPGGPDAPETEAPQGIPELIE <---Intron---> LLTSQISIPTRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSVSL
        nt   > |||||/||||||||||/||||||||||||||| <   2393nt   > ||||||||| ||||||||||||||||||||||||||||||||/||
Target         FRGAPIIPVAAKPGGPEAPETEAPQGIPELIE                LLTSQISIPMRDPSGPFLMSVDHCFSIKGQGTVMTGTILSGSISL
               tcggcaacgggacggcggcgaggccgacgcag                ccatcatacaagctgctcatggctttaagcgagaagaactgtaac
         ag    tggccttctccacggcaccacaccagtcatta   gt     ag    ttccatctctgaccgctttctaagtctagagcttcgcttcgctgt
              gcatagtatggcgacaagctatatagctagctg                cggcgttcagaccgagccgtgcctcccacactggagcccaccccc
                                                                                                            

Query   GDSVEIPALK <---Intron---> VVRKVKSMQMFHTPVSSAVQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFH
        |||||||||| <  77196nt   > ||/||||||||| |//||/|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Target  GDSVEIPALK                VVKKVKSMQMFHMPITSAMQGDRLGICVTQFDPKLLERGLVCAPESLHTVHAALISVEKIPYFRGPLQTKAKFH
        ggaggacgca                ggaagatacatcacaatgacggccgatgactgcaccgcgtgtgcgtccagcggcatggaacttcgcccaagatc
        gagtatccta   gt     ag    ttaatactattatctccctagagtgtgtcatacattaggttgccactactaccttctaatcatggctacacata
        tctggctccg                ggggggcgggtcgtctacgaacggcccccgtccggggcgggtctgcgttctgccctgagaatcggcgacgcgcc
                                                                                                            

Query   ITVGHETVMGRVMFFGPAPDSLDREPVLDSFDFSREYLFQEQYLCPGPDPAAAHAAKADEKAGQVLAGRCPQQQWALVEFEKPVTCPRLCLVIGSRLDAD
        |||||||||||/||| ||||/ |/||/||||/||/|||||||||     ||  /  /||/||||   | ||/||||||||||||||||||||||||||||
Target  ITVGHETVMGRLMFFSPAPDNFDQEPILDSFNFSQEYLFQEQYLSKDLAPAVTNNDEADKKAGQATEGHCPRQQWALVEFEKPVTCPRLCLVIGSRLDAD
        aaggcgagagctattacgcgatgcgcacgttattcgtctcgctctagtgcggaaaggggaaggcgaggctcccctgcggtgacgatccctcgagtacggg
        tctgaacttggttttgcccaataaacttactatcaaattaaaatcaatccctcaaaacaaacgaccagagcgaagcttataactcgcgtgtttgcgtaca
        tagctaacgcgggcccttatctcggtagctccctaacccgggcacgtgaaagatttgccggccgcagctttggggcgagtggcccctggcggtctgatgc
                                                                                                            

Query   IHANTCRLAFHGVLLHGLEDRNYAESALPTLRVYKLKQKHGVVER <---Intron---> VLDDHSVIGRSLFKKETNIQLFVGLRVQLSTGELGVIDS
        || |||||||||/|||||||||||/| || |/||||| |||/||| <  16452nt   >  /||/||||||||||||||||||||/| |||||||||||
Target  IHTNTCRLAFHGILLHGLEDRNYADSFLPRLKVYKLKHKHGLVER                AMDDYSVIGRSLFKKETNIQLFVGLKVHLSTGELGVIDS
        acaaatccgtcgacccgcggaatggatccacagtacacacgcggc                gaggtagagctctaagaaacctggcagcctaggcggaga
        tacacggtctagtttagtaagaacagttcgtataataaaagttag   gt     ag    ctaaagttggcttaaacatatttgtatatccgatgttag
        tcccgcgacctccgctgggcgctccccgcggggcgggcgtccagg                ggtcctgccccgtaggcccgccggcggcgctaagcccct
                                                                                                            

Query   AFGQSGKFKVHVPG <---Intron---> GLSPESKKILTSALKKRGRAGRGEAAKPEE-AERPEPAQPVGLSLSFKRYVFDAHKRMVQSP
        |||||||||/|/|| <  48191nt   > ||||||||||| ||||| ||||||| / || ||| ||/| | |||/||||||| ||||||||
Target  AFGQSGKFKIHIPG                GLSPESKKILTPALKKRARAGRGEATRQEESAERSEPSQHVALSLTFKRYVFDTHKRMVQSP
        gtgcagataacacg                gcacgtaaacacgcaacgcggcgggaacggaggcagctccggcacatactgtgacacagctc
        ctgaggatatatc    gt     ag   ggtgcacaattccctaagcgcgggaccgaaagcaggaccaatctgtctagattacaagttacc
        cccgccgcgccca                tccctgcggcgatccgggcgcccggtcggggctggcgcagtgaccgtcgtccccccgcgcgtc
                                                                                                    
------- positions -------
Exon 1    52887459     52887774
Exon 2    52794565     52794772
Exon 3    52779719     52779815
Exon 4    52777161     52777325
Exon 5    52699308     52699964
Exon 6    52682699     52682855
Exon 7    52634320     52634507

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *