Output_id:  TR.22.selenocysteine
----------  --------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782571|gb|CM001963.1|
-Program        genewise
-Query name     gi|29476880|gb|AAH50032.1| MODIFIED TXNRD3 protein [Homo sapiens]
-Query range    8-683      length:683   coverage: 0.99
-Profile range  8-1345     length:1345  coverage: 0.99    sec_position: [1344]
-ASI:           0.397     (ignoring gaps: 0.5495)
-AWSIc:         0.8019     Z-score: 0.834
-AWSIw:         0.805     Z-score: 1.101
-State          kept

------- alignment -------
Query   GSVRRPSGPVPAPQPP-AFRFVSRPGRARSESETLERSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSRSSEAREELRRHLVGLIERS
        |||||||  |  | || ||||||||| | |||||/|/||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||
Target  GSVRRPSAQVSVPPPPPAFRFVSRPGPAGSESETVEQSPPQSPGPGKAGDAPNRRSGHVRGARVLSPPGRRARLSSPGPSSSSEAREELRRRLRGLIERS
        gagccctgcgtgcccccgtctgaacgcggagagaggctccctcgcgaggggcacctgcgcggcgttccgccgccttcgcaattggcggccccccgcagca
        ggtggcccatctcccccctgttggcgccggagactaacccaccgcgacgaccaggcgatggcgttcccgggcgtcccgcggccacgaatgggtggttagg
        cttcccacgctgggagtgtgtgcgccgcgcacgcgggggaggagggggctcccccgctcaggcggggggccccggccgcccgcgccgggccccgcctgcc
                                                                                                            

Query   RVVIFSKSYCPHSTR <---Intron---> VKELFSSLGVECNVLELDQVD <---Intron---> DGARVQEVLSEITNQKTVPNIFVNKVHVGGCD
        ||/|||||||||||| <  10176nt   > ||||||||||||||||||||| <   1299nt   > |||/||||||||||||||||/|||||||||||
Target  RVMIFSKSYCPHSTR                VKELFSSLGVECNVLELDQVD                DGAKVQEVLSEITNQKTVPNVFVNKVHVGGCD
        cgaataaattccaac                gagcttttgggtagtgcgcgg                gggagcggctgaaacaagcagtgaagcgggtg
        gttttgagagcagcg   gt     ag    taattcctgtagattataat    gt     ag   aagcataattcatcaaactcatttaatatggga
        gggcccgcctccttg                gaactttgacatccgattat                ttgcgtaaggaacttgatgctttgtagtatatc
                                                                                                            

Query   QTFQ <---Intron---> AYQSGLLQKLLQEDLAYDYDLIIIGGGSGGLSCAK <---Intron---> EAAILGKKVMVLDFVVPSPQGTSWG <--
        |||| <   1878nt   > |||||||||||||| |||||||//||||||||||| <   466nt    > ||||||||||||||||||||||||| <  
Target  QTFQ                AYQSGLLQKLLQEDSAYDYDLIVVGGGSGGLSCAK                EAAILGKKVMVLDFVVPSPQGTSWG    
        catc                gtcagttcacccggtgtgtgcagggggtggcttga                gggatgaagagcgtggctccgattg    
        acta   gt     ag    caaggttaattaaaccaaaattttgggcggtcgca   gt     ag    accttgaattttatttcccagccg    g
        atcg                atgttgaggctgataattttccttttttcctatgg                atctgagatggacttcgatgcacg     
                                                                                                            

Query   -Intron---> LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQV <---Intron---> RHNWETMTKAIQNHISSLNWGYRLSLREKAVA
         1797nt   > |||||||||||||||||||||||||||||||||||||||| <   8958nt   > /|||||||||||||||||||||||||||||||
Target              LGGTCVNVGCIPKKLMHQAALLGQALCDSRKFGWEYNQQV                KHNWETMTKAIQNHISSLNWGYRLSLREKAVA
                    cggatgaggtacaataccggctgcgttgtaatgtgtaccg                acatgaaaagacacaatcatgtattcagaggg
        t     ag   gtggcgtatggtcaattaaccttgactgacgatggaaaaa    gt     ag   taaagactcactaaatgctaggagtctgaactc
                   tttcttatattttgaggtgtctgggagtcagatcggttaa                ggccggggaaatgcccctacgccggtggagtgc
                                                                                                            

Query   YVNSYGEFVEHHKIK <---Intron---> ATNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITS <---Intron---> DDLFSLPYCPGKTL
        ||||||||||||||| <   3076nt   >  |||||||||||||||||||||||||||||||||||||| <   984nt    > ||||||||||||||
Target  YVNSYGEFVEHHKIK                VTNKKGQETYYTAAQFVIATGERPRYLGIQGDKEYCITS                DDLFSLPYCPGKTL
        tgattggtggccaaa                gaaaagcgattaggctgagaggaccttgacggagttaaa                ggcttccttcgaat
        atacagattaaaata   gt     ag    tcaaagaacaacccatttccgagcgatgtagaaaagtcg   gt     ag    aattctcagcgact
        tctctagttattaag                gctaaaggtttttagtcaagtagagcaacaataacttt                ttctttgtcctcaaa
                                                                                                            

Query   VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVM <---Intron---> VQQLEKGSPGKLKVLAKSTEGTE
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   1543nt   > /||||||||||||||||||||||
Target  VVGASYVALECAGFLAGFGLDVTVMVRSILLRGFDQEMAEKVGSYMEQHGVKFLRKFIPVM                IQQLEKGSPGKLKVLAKSTEGTE
        ggggttggcgtggtcggtgcggagagctacccgtgcgaggaggttagccggatccatacga                acctgagtcgacagtgataggag
        ttgccatctagcgttcgtgtatctttgctttggtaaatcaatgcataaagtattgattctt   gt     ag    taataagccgatattcaccagca
        ggtcttccggtagtgtctcatcatgacactctctcaagaaagtccgggttggcagacatgg                tagggatataggaagtaccaaaa
                                                                                                            

Query   TIEGVYNT <---Intron---> VLLAIGRDSCTRKIGLEKIGVKINEK <---Intron---> SGKIPVNDVEQTNVPYVYAVGDILEDKPELTPVA
        |||||||| <   7925nt   > |||||||||||||/|||||||||||| <   560nt    > ||||||||||||/|||||||||| | ||||||||
Target  TIEGVYNT                VLLAIGRDSCTRKMGLEKIGVKINEK                SGKIPVNDVEQTSVPYVYAVGDISEGKPELTPVA
        aagggtaa                gttgagcgttaaaagtgaaggaaaga                agaacgagggcaagctgtggggatggacgcacgg
        ctagtaac   gt     ag    tttctggacgcgatgtaatgtataaa   gt     ag    ggatctaataacgtcatactgatcagacatcctc
        ataactca                tgattttcctagagcgggtccattg                gtaaatattgagctgatctttgttggtgagcttcc
                                                                                                            

Query   IQSGKLLAQRLFGASLEK <---Intron---> CDYINVPTTVFTPLEYGCCGLSEEKAIEVYKKENLE <---Intron---> IYHTLFWPLEWTVA
        ||||||||/||||||||| <   6846nt   > |||/|||||||||||||||||/|||||||||||||| <   4782nt   > ||||||||||||||
Target  IQSGKLLARRLFGASLEK                CDYVNVPTTVFTPLEYGCCGLAEEKAIEVYKKENLE                IYHTLFWPLEWTVA
        actgaccgcactggttga                tgtgagcaagtaccgtgttgtgggagaggtaagacg                atcatttccgtagg
        tacgattcggttgcctaa   gt     ag    gaatatcccttcctaaggggtcaaactataaaaata   gt     ag    taacttgctagctc
        agacggatgattgctaag                ttttttgtggtttggttccaataaattaataagtaa                atttgcgttagaat
                                                                                                            

Query   GRENNTCYAKIICNKFDH <---Intron---> DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE <---Intron---> VFTTL
        ||||||||||||||| || <   2790nt   > ||||||||||||||||||||||||||||||||||||||||||||| <   866nt    > |||||
Target  GRENNTCYAKIICNKLDH                DRVIGFHILGPNAGEVTQGFAAAMKCGLTKQLLDDTIGIHPTCGE                VFTTL
        gagaaattgaaataatgc                gcgagtcacgcaggggacgtgggaatgcaacccggaagaccatgg                gtaat
        ggaaacgacattgaataa   gt     ag    agttgtattgcacgatcagtccctaggtcaattaactgtaccgga   gt     ag    ttcct
        cagccttcagacctaact                tggaattttaacctgtcaatatagatgcaagattcctatccatgg                gcgta
                                                                                                            

Query   EITKSSGLDITQKGCUG
        |||||||||||||||||
Target  EITKSSGLDITQKGCUG
        gaaattgcgaacagttg
        atcaccgtatcaagggg
        acagggaatctgaccac
                       * 
------- positions -------
Exon 1    54360735     54361079
Exon 2    54371256     54371316
Exon 3    54372616     54372725
Exon 4    54374604     54374708
Exon 5    54375175     54375247
Exon 6    54377045     54377164
Exon 7    54386123     54386265
Exon 8    54389342     54389457
Exon 9    54390442     54390667
Exon 10   54392211     54392303
Exon 11   54400229     54400305
Exon 12   54400866     54401022
Exon 13   54407869     54407976
Exon 14   54412759     54412854
Exon 15   54415645     54415779
Exon 16   54416646     54416711

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *