Command line: [exonerate -m p2g --showtargetgff -q tr3.1.fa.U_to_X -t gi|511782571|gb|CM001963.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000141_2.0 # Protein # Thioredoxin reductase 3 (TR3) # Human (Homo sapiens) 
        Target: gi|511782571|gb|CM001963.1|:subseq(54310678,155104) Chlorocebus sabaeus isolate 1994-021 chromosome 22, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 3329
   Query range: 3 -> 698
  Target range: 49999 -> 106033

      4 : GlyArgGlyGluArgLeuProArgGlyPheAlaArgValValArgValAlaSerGluG :     23
          ||| !!||||||||||||||| !!|||||||||||||||:!!|||||||||||| !!|
          GlyTrpGlyGluArgLeuProGlyGlyPheAlaArgValLeuArgValAlaSer***G
  50000 : GGGTGGGGCGAGCGGCTGCCTGGCGGATTCGCGCGGGTGTTGAGAGTGGCCAGCTAAG :  50057

     24 : lySerValArgArgProSerGlyProValProAla<->ProGlnProProAlaPheAr :     41
          ||||||||||||||||||||!.!! !||| !!!.!   |||! !||||||||||||||
          lySerValArgArgProSerAlaGlnValSerValProProProProProAlaPheAr
  50058 : GCAGTGTTCGCCGCCCCTCAGCCCAGGTCTCTGTGCCGCCGCCACCGCCTGCGTTTCG :  50114

     42 : gPheValSerArgProGlyArgAlaArgSerGluSerGluThrLeuGluArgSerPro :     60
          |||||||||||||||||||! !||| !!|||||||||||||||:!!|||!:!||||||
          gPheValSerArgProGlyProAlaGlySerGluSerGluThrValGluGlnSerPro
  50115 : GTTTGTGAGCAGGCCCGGCCCGGCCGGGAGCGAAAGCGAGACCGTGGAGCAGTCGCCG :  50171

     61 : ProGlnSerProGlyProGlyLysAlaGlyAspAlaProAsnArgArgSerGlyHisV :     80
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ProGlnSerProGlyProGlyLysAlaGlyAspAlaProAsnArgArgSerGlyHisV
  50172 : CCACAGTCGCCAGGGCCGGGGAAGGCGGGCGATGCCCCCAACCGCCGCTCGGGCCATG :  50231

     81 : alArgGlyAlaArgValLeuSerProProGlyArgArgAlaArgLeuSerSerProGl :     99
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alArgGlyAlaArgValLeuSerProProGlyArgArgAlaArgLeuSerSerProGl
  50232 : TCCGAGGGGCGCGCGTGTTGTCGCCGCCGGGGCGCCGCGCCCGCCTGTCGTCCCCCGG :  50288

    100 : yProSerArgSerSerGluAlaArgGluGluLeuArgArgHisLeuValGlyLeuIle :    118
          |||||||!!!||||||||||||||||||||||||||||||!.!|||  !|||||||||
          yProSerSerSerSerGluAlaArgGluGluLeuArgArgArgLeuArgGlyLeuIle
  50289 : GCCCAGCAGCTCGTCCGAGGCCCGCGAGGAGCTGCGCCGCCGCCTCCGGGGCCTCATT :  50345

    119 : GluArgSerArgValValIlePheSerLysSerTyrCysProHisSerThrArg  >> :    137
          |||||||||||||||:!!||||||||||||||||||||||||||||||||||||    
          GluArgSerArgValMetIlePheSerLysSerTyrCysProHisSerThrArg++  
  50346 : GAGCGCAGCCGGGTGATGATCTTCAGCAAGAGCTACTGTCCCCACAGTACTCGGgt.. :  50404

    138 : >> Target Intron 1 >>>>  ValLysGluLeuPheSerSerLeuGlyValGlu :    147
                 10176 bp          |||||||||||||||||||||||||||||||||
                                 ++ValLysGluLeuPheSerSerLeuGlyValGlu
  50405 : .......................agGTGAAAGAACTCTTTTCTTCTTTGGGAGTCGAA :  60608

    148 : CysAsnValLeuGluLeuAspGlnVal{A}  >>>> Target Intron 2 >>>>  :    157
          |||||||||||||||||||||||||||{|}           1299 bp          
          CysAsnValLeuGluLeuAspGlnVal{A}++                         +
  60609 : TGTAACGTCTTGGAACTTGATCAAGTT{G}gt.........................a :  61936

    158 :  {sp}AspGlyAlaArgValGlnGluValLeuSerGluIleThrAsnGlnLysThrVa :    175
           {||}|||||||||!:!|||||||||||||||||||||||||||||||||||||||||
          +{sp}AspGlyAlaLysValGlnGluValLeuSerGluIleThrAsnGlnLysThrVa
  61937 : g{AT}GATGGGGCCAAGGTTCAAGAAGTGCTGTCAGAAATCACTAATCAGAAAACTGT :  61991

    176 : lProAsnIlePheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln  > :    194
          |||||||:!!|||||||||||||||||||||||||||||||||||||||||||||   
          lProAsnValPheValAsnLysValHisValGlyGlyCysAspGlnThrPheGln++ 
  61992 : GCCCAATGTTTTTGTGAATAAAGTGCATGTAGGTGGATGTGACCAAACTTTCCAGgt. :  62050

    195 : >>> Target Intron 3 >>>>  AlaTyrGlnSerGlyLeuLeuGlnLysLeuLe :    204
                  1878 bp           ||||||||||||||||||||||||||||||||
                                  ++AlaTyrGlnSerGlyLeuLeuGlnLysLeuLe
  62051 : ........................agGCATATCAGAGTGGTTTGTTACAGAAGCTCCT :  63956

    205 : uGlnGluAspLeuAlaTyrAspTyrAspLeuIleIleIleGlyGlyGlySerGlyGly :    223
          ||||||||||! !|||||||||||||||||||||:!!:!!||||||||||||||||||
          uGlnGluAspSerAlaTyrAspTyrAspLeuIleValValGlyGlyGlySerGlyGly
  63957 : TCAGGAAGATTCAGCATATGATTATGATCTCATCGTTGTTGGTGGTGGTTCTGGCGGC :  64013

    224 : LeuSerCysAlaLys  >>>> Target Intron 4 >>>>  GluAlaAlaIleLe :    233
          |||||||||||||||            466 bp           ||||||||||||||
          LeuSerCysAlaLys++                         ++GluAlaAlaIleLe
  64014 : CTTTCATGTGCGAAGgt.........................agGAAGCTGCCATTTT :  64509

    234 : uGlyLysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp :    252
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uGlyLysLysValMetValLeuAspPheValValProSerProGlnGlyThrSerTrp
  64510 : GGGAAAGAAAGTTATGGTGCTAGACTTTGTTGTCCCGTCACCTCAGGGCACATCCTGG :  64566

    253 : {G}  >>>> Target Intron 5 >>>>  {ly}LeuGlyGlyThrCysValAsnV :    261
          {|}           1797 bp           {||}||||||||||||||||||||||
          {G}++                         ++{ly}LeuGlyGlyThrCysValAsnV
  64567 : {G}gt.........................ag{GT}CTTGGTGGCACTTGTGTAAATG :  66390

    262 : alGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCy :    280
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          alGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlnAlaLeuCy
  66391 : TAGGTTGTATTCCTAAGAAATTGATGCATCAGGCTGCCCTTTTGGGGCAGGCATTGTG :  66447

    281 : sAspSerArgLysPheGlyTrpGluTyrAsnGlnGln{V}  >>>> Target Intr :    293
          |||||||||||||||||||||||||||||||||||||{|}           8958 bp
          sAspSerArgLysPheGlyTrpGluTyrAsnGlnGln{V}++                
  66448 : TGACTCAAGGAAATTTGGCTGGGAGTATAATCAACAA{G}gt................ :  66489

    294 : on 6 >>>>  {al}ArgHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisI :    308
                     {||}!:!||||||||||||||||||||||||||||||||||||||||
                   ++{al}LysHisAsnTrpGluThrMetThrLysAlaIleGlnAsnHisI
  66490 : .........ag{TG}AAGCACAACTGGGAGACGATGACAAAAGCAATTCAGAACCACA :  75489

    309 : leSerSerLeuAsnTrpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrVa :    327
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          leSerSerLeuAsnTrpGlyTyrArgLeuSerLeuArgGluLysAlaValAlaTyrVa
  75490 : TCAGCTCTCTAAACTGGGGCTACAGGTTGTCTCTGAGGGAAAAGGCTGTGGCCTATGT :  75546

    328 : lAsnSerTyrGlyGluPheValGluHisHisLysIleLys  >>>> Target Intr :    341
          ||||||||||||||||||||||||||||||||||||||||           3076 bp
          lAsnSerTyrGlyGluPheValGluHisHisLysIleLys++                
  75547 : CAATTCCTATGGAGAGTTTGTTGAACATCATAAAATAAAGgt................ :  75590

    342 : on 7 >>>>  AlaThrAsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPh :    356
                     !.!||||||||||||||||||||||||||||||||||||||||||||
                   ++ValThrAsnLysLysGlyGlnGluThrTyrTyrThrAlaAlaGlnPh
  75591 : .........agGTGACCAATAAAAAAGGACAGGAGACTTATTATACTGCTGCACAGTT :  78709

    357 : eValIleAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyr :    375
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          eValIleAlaThrGlyGluArgProArgTyrLeuGlyIleGlnGlyAspLysGluTyr
  78710 : TGTCATAGCAACGGGTGAAAGGCCACGGTACTTAGGAATCCAAGGAGATAAAGAATAC :  78766

    376 : CysIleThr{Se}  >>>> Target Intron 8 >>>>  {r}AspAspLeuPheS :    384
          |||||||||{||}            984 bp           {|}|||||||||||||
          CysIleThr{Se}++                         ++{r}AspAspLeuPheS
  78767 : TGTATTACT{AG}gt.........................ag{T}GATGACCTTTTTT :  79777

    385 : erLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGl :    403
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          erLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrValAlaLeuGl
  79778 : CTCTGCCTTACTGCCCTGGCAAAACATTAGTGGTGGGTGCCTCTTATGTCGCCCTGGA :  79834

    404 : uCysAlaGlyPheLeuAlaGlyPheGlyLeuAspValThrValMetValArgSerIle :    422
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          uCysAlaGlyPheLeuAlaGlyPheGlyLeuAspValThrValMetValArgSerIle
  79835 : GTGTGCAGGGTTTCTGGCTGGCTTTGGCCTAGATGTCACAGTTATGGTACGCTCAATC :  79891

    423 : LeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrMetGluGlnH :    442
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuLeuArgGlyPheAspGlnGluMetAlaGluLysValGlySerTyrMetGluGlnH
  79892 : CTTCTCCGTGGCTTTGACCAAGAAATGGCAGAAAAAGTGGGTTCCTACATGGAGCAGC :  79951

    443 : isGlyValLysPheLeuArgLysPheIleProValMet  >>>> Target Intron :    455
          ||||||||||||||||||||||||||||||||||||||           1543 bp  
          isGlyValLysPheLeuArgLysPheIleProValMet++                  
  79952 : ATGGTGTGAAGTTCCTACGGAAATTCATACCTGTGATGgt.................. :  79992

    456 :  9 >>>>  ValGlnGlnLeuGluLysGlySerProGlyLysLeuLysValLeuAlaL :    471
                   :!!||||||||||||||||||||||||||||||||||||||||||||||
                 ++IleGlnGlnLeuGluLysGlySerProGlyLysLeuLysValLeuAlaL
  79993 : .......agATTCAACAGTTGGAGAAAGGTTCACCTGGAAAGCTGAAAGTATTGGCTA :  81581

    472 : ysSerThrGluGlyThrGluThrIleGluGlyValTyrAsnThr  >>>> Target  :    486
          ||||||||||||||||||||||||||||||||||||||||||||            79
          ysSerThrGluGlyThrGluThrIleGluGlyValTyrAsnThr++            
  81582 : AATCCACCGAAGGAACAGAAACAATTGAAGGAGTCTATAACACAgt............ :  81628

    487 : Intron 10 >>>>  ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysIle :    499
          25 bp           |||||||||||||||||||||||||||||||||||||||!!:
                        ++ValLeuLeuAlaIleGlyArgAspSerCysThrArgLysMet
  81629 : ..............agGTTTTGTTAGCTATTGGTCGTGACTCCTGTACAAGGAAAATG :  89590

    500 : GlyLeuGluLysIleGlyValLysIleAsnGlu{Ly}  >>>> Target Intron  :    511
          |||||||||||||||||||||||||||||||||{||}            560 bp   
          GlyLeuGluLysIleGlyValLysIleAsnGlu{Ly}++                   
  89591 : GGCTTGGAGAAGATTGGCGTCAAAATTAATGAG{AA}gt................... :  89630

    512 : 11 >>>>  {s}SerGlyLysIleProValAsnAspValGluGlnThrAsnValProT :    527
                   {|}||||||||||||||||||||||||||||||||||||!:!|||||||
                 ++{s}SerGlyLysIleProValAsnAspValGluGlnThrSerValProT
  89631 : .......ag{G}AGTGGAAAAATACCTGTAAATGATGTGGAACAGACCAGTGTGCCAT :  90234

    528 : yrValTyrAlaValGlyAspIleLeuGluAspLysProGluLeuThrProValAlaIl :    546
          |||||||||||||||||||||||! !|||! !||||||||||||||||||||||||||
          yrValTyrAlaValGlyAspIleSerGluGlyLysProGluLeuThrProValAlaIl
  90235 : ATGTCTATGCTGTTGGGGATATTTCGGAGGGTAAGCCAGAGCTCACTCCTGTCGCCAT :  90291

    547 : eGlnSerGlyLysLeuLeuAlaGlnArgLeuPheGlyAlaSerLeuGluLys  >>>> :    564
          ||||||||||||||||||||||!:!|||||||||||||||||||||||||||      
          eGlnSerGlyLysLeuLeuAlaArgArgLeuPheGlyAlaSerLeuGluLys++    
  90292 : ACAGTCAGGCAAGCTGCTAGCTCGGAGACTTTTTGGGGCCTCTTTAGAAAAGgt.... :  90347

    565 :  Target Intron 12 >>>>  CysAspTyrIleAsnValProThrThrValPheT :    575
                6846 bp           |||||||||:!!||||||||||||||||||||||
                                ++CysAspTyrValAsnValProThrThrValPheT
  90348 : ......................agTGTGATTATGTTAATGTTCCGACTACGGTGTTTA :  97224

    576 : hrProLeuGluTyrGlyCysCysGlyLeuSerGluGluLysAlaIleGluValTyrLy :    594
          |||||||||||||||||||||||||||||:!!||||||||||||||||||||||||||
          hrProLeuGluTyrGlyCysCysGlyLeuAlaGluGluLysAlaIleGluValTyrLy
  97225 : CTCCTCTGGAGTATGGTTGCTGCGGATTAGCTGAAGAAAAAGCTATTGAAGTATATAA :  97281

    595 : sLysGluAsnLeuGlu  >>>> Target Intron 13 >>>>  IleTyrHisThr :    603
          ||||||||||||||||            4782 bp           ||||||||||||
          sLysGluAsnLeuGlu++                          ++IleTyrHisThr
  97282 : AAAAGAGAATCTAGAAgt..........................agATATATCATACT : 102090

    604 : LeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrCysTyrAlaL :    623
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuPheTrpProLeuGluTrpThrValAlaGlyArgGluAsnAsnThrCysTyrAlaL
 102091 : TTGTTCTGGCCTCTTGAATGGACAGTAGCTGGCAGAGAGAACAACACTTGTTACGCAA : 102150

    624 : ysIleIleCysAsnLysPheAspHis  >>>> Target Intron 14 >>>>  As :    632
          |||||||||||||||||!!.||||||            2790 bp           ||
          ysIleIleCysAsnLysLeuAspHis++                          ++As
 102151 : AGATAATCTGCAATAAATTAGACCATgt..........................agGA : 104967

    633 : pArgValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnGlyPhe :    651
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          pArgValIleGlyPheHisIleLeuGlyProAsnAlaGlyGluValThrGlnGlyPhe
 104968 : TCGGGTGATAGGATTTCATATTCTTGGACCAAACGCCGGTGAGGTTACCCAAGGATTT : 105024

    652 : AlaAlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyIleH :    671
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaAlaAlaMetLysCysGlyLeuThrLysGlnLeuLeuAspAspThrIleGlyIleH
 105025 : GCAGCTGCAATGAAATGTGGGCTCACAAAACAGCTACTTGATGACACCATTGGAATTC : 105084

    672 : isProThrCysGlyGlu  >>>> Target Intron 15 >>>>  ValPheThrTh :    680
          |||||||||||||||||            866 bp            |||||||||||
          isProThrCysGlyGlu++                          ++ValPheThrTh
 105085 : ACCCCACATGTGGGGAGgt..........................agGTGTTCACGAC : 105977

    681 : rLeuGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCysUnkGly :    698
          |||||||||||||||||||||||||||||||||||||||||||||||||   |||
          rLeuGluIleThrLysSerSerGlyLeuAspIleThrGlnLysGlyCys***Gly
 105978 : TTTAGAAATCACAAAGTCGTCGGGACTAGATATCACTCAGAAAGGCTGCTGAGGC : 106033

vulgar: SPP00000141_2.0 3 698 . gi|511782571|gb|CM001963.1|:subseq(54310678,155104) 49999 106033 + 3329 M 31 93 G 0 3 M 102 306 5 0 2 I 0 10172 3 0 2 M 20 60 S 0 1 5 0 2 I 0 1295 3 0 2 S 1 2 M 36 108 5 0 2 I 0 1874 3 0 2 M 35 105 5 0 2 I 0 462 3 0 2 M 24 72 S 0 1 5 0 2 I 0 1793 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 8954 3 0 2 S 1 2 M 47 141 5 0 2 I 0 3072 3 0 2 M 38 114 S 0 2 5 0 2 I 0 980 3 0 2 S 1 1 M 75 225 5 0 2 I 0 1539 3 0 2 M 31 93 5 0 2 I 0 7921 3 0 2 M 25 75 S 0 2 5 0 2 I 0 556 3 0 2 S 1 1 M 52 156 5 0 2 I 0 6842 3 0 2 M 36 108 5 0 2 I 0 4778 3 0 2 M 32 96 5 0 2 I 0 2786 3 0 2 M 45 135 5 0 2 I 0 862 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	gene	50000	106033	3329	+	.	gene_id 1 ; sequence SPP00000141_2.0 ; gene_orientation +
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	50000	50401	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	50000	50401	.	+	.	insertions 3 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	50402	50403	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	50402	60577	.	+	.	intron_id 1
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	60576	60577	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	60578	60638	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	60578	60638	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	60639	60640	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	60639	61937	.	+	.	intron_id 2
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	61936	61937	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	61938	62047	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	61938	62047	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	62048	62049	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	62048	63925	.	+	.	intron_id 3
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	63924	63925	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	63926	64030	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	63926	64030	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	64031	64032	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	64031	64496	.	+	.	intron_id 4
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	64495	64496	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	64497	64569	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	64497	64569	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	64570	64571	.	+	.	intron_id 5 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	64570	66366	.	+	.	intron_id 5
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	66365	66366	.	+	.	intron_id 4 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	66367	66486	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	66367	66486	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	66487	66488	.	+	.	intron_id 6 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	66487	75444	.	+	.	intron_id 6
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	75443	75444	.	+	.	intron_id 5 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	75445	75587	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	75445	75587	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	75588	75589	.	+	.	intron_id 7 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	75588	78663	.	+	.	intron_id 7
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	78662	78663	.	+	.	intron_id 6 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	78664	78779	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	78664	78779	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	78780	78781	.	+	.	intron_id 8 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	78780	79763	.	+	.	intron_id 8
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	79762	79763	.	+	.	intron_id 7 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	79764	79989	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	79764	79989	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	79990	79991	.	+	.	intron_id 9 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	79990	81532	.	+	.	intron_id 9
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	81531	81532	.	+	.	intron_id 8 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	81533	81625	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	81533	81625	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	81626	81627	.	+	.	intron_id 10 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	81626	89550	.	+	.	intron_id 10
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	89549	89550	.	+	.	intron_id 9 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	89551	89627	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	89551	89627	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	89628	89629	.	+	.	intron_id 11 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	89628	90187	.	+	.	intron_id 11
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	90186	90187	.	+	.	intron_id 10 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	90188	90344	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	90188	90344	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	90345	90346	.	+	.	intron_id 12 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	90345	97190	.	+	.	intron_id 12
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	97189	97190	.	+	.	intron_id 11 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	97191	97298	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	97191	97298	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	97299	97300	.	+	.	intron_id 13 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	97299	102080	.	+	.	intron_id 13
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	102079	102080	.	+	.	intron_id 12 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	102081	102176	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	102081	102176	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	102177	102178	.	+	.	intron_id 14 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	102177	104966	.	+	.	intron_id 14
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	104965	104966	.	+	.	intron_id 13 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	104967	105101	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	104967	105101	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice5	105102	105103	.	+	.	intron_id 15 ; splice_site "GT"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	intron	105102	105967	.	+	.	intron_id 15
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	splice3	105966	105967	.	+	.	intron_id 14 ; splice_site "AG"
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	cds	105968	106033	.	+	.	
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	exon	105968	106033	.	+	.	insertions 0 ; deletions 0
gi|511782571|gb|CM001963.1|:subseq(54310678,155104)	exonerate:protein2genome:local	similarity	50000	106033	3329	+	.	alignment_id 1 ; Query SPP00000141_2.0 ; Align 50000 4 93 ; Align 50096 35 306 ; Align 60578 137 60 ; Align 61940 158 108 ; Align 63926 194 105 ; Align 64497 229 72 ; Align 66369 254 117 ; Align 75447 294 141 ; Align 78664 341 114 ; Align 79765 380 225 ; Align 81533 455 93 ; Align 89551 486 75 ; Align 90189 512 156 ; Align 97191 564 108 ; Align 102081 600 96 ; Align 104967 632 135 ; Align 105968 677 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis