Command line: [exonerate -m p2g --showtargetgff -q tr2.2.fa.U_to_X -t gi|511782574|gb|CM001960.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000138_2.0 # Protein # Thioredoxin reductase 2 (TR2) # Human (Homo sapiens) 
        Target: gi|511782574|gb|CM001960.1|:subseq(5775651,141026) Chlorocebus sabaeus isolate 1994-021 chromosome 19, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 2566
   Query range: 0 -> 524
  Target range: 27552 -> 91026

     1 : MetAlaAlaMetAlaValAlaLeuArgGlyLeuGlyGlyArgPheArgTrpArgThrGln :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetAlaAlaMetAlaValAlaLeuArgGlyLeuGlyGlyArgPheArgTrpArgThrGln
 27553 : ATGGCGGCGATGGCGGTGGCGCTGCGGGGATTAGGAGGGCGCTTCCGGTGGCGGACGCAG : 27610

    21 : AlaValAlaGlyGlyValArgGlyAlaAlaArgGlyAlaAla{A}  >>>> Target I :    35
         ||||||||||||||||||||||||||||||||||||||||||{|}           9882
         AlaValAlaGlyGlyValArgGlyAlaAlaArgGlyAlaAla{A}++             
 27611 : GCTGTGGCGGGCGGGGTACGGGGCGCTGCGCGGGGCGCGGCA{G}gt............. : 27658

    36 : ntron 1 >>>>  {la}GlyGlnArgAspTyrAspLeuLeuValValGlyGlyGlySer :    49
          bp           {||}|||||||||||||||||||||||||||:!!||||||||||||
                     ++{la}GlyGlnArgAspTyrAspLeuLeuValIleGlyGlyGlySer
 27659 : ............ag{CA}GGTCAGCGGGACTATGATCTCCTGGTGATTGGCGGGGGATCT : 37579

    50 : GlyGlyLeuAlaCysAlaLysGlu{A}  >>>> Target Intron 2 >>>>  {la} :    58
         ||||||||||||||||||||||||{|}           11186 bp          {||}
         GlyGlyLeuAlaCysAlaLysGlu{A}++                         ++{la}
 37580 : GGCGGCCTGGCTTGTGCCAAGGAG{G}gt.........................ag{CC} : 48793

    59 : AlaGlnLeuGlyArgLysValAlaValValAspTyrValGluProSerProGln{G}  > :    77
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||{|}   
         AlaGlnLeuGlyArgLysValAlaValValAspTyrValGluProSerProGln{G}++ 
 48794 : GCTCAGCTGGGAAGGAAGGTGGCCGTGGTGGACTACGTGGAACCTTCTCCCCAA{G}gt. : 48852

    78 : >>> Target Intron 3 >>>>  {ly}ThrArgTrpGlyLeuGlyGlyThrCysVal :    87
                 1151 bp           {||}||||||||||||||||||||||||||||||
                                 ++{ly}ThrArgTrpGlyLeuGlyGlyThrCysVal
 48853 : ........................ag{GC}ACCCGGTGGGGCCTCGGTGGCACCTGCGTC : 50030

    88 : AsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyLeuIle :   107
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyLeuIle
 50031 : AATGTGGGCTGCATCCCCAAGAAGCTGATGCACCAGGCGGCACTGCTGGGAGGCCTGATC : 50090

   108 : GlnAspAlaProAsnTyrGlyTrpGluValAlaGlnProValProHisAsp{Tr}  >>> :   125
         !:!|||||||||:!!||||||||||||||||||||||||||||||||||||{||}     
         ArgAspAlaProHisTyrGlyTrpGluValAlaGlnProValProHisAsp{Tr}++   
 50091 : CGAGATGCCCCCCACTACGGCTGGGAGGTGGCCCAGCCCGTGCCGCATGAC{TG}gt... : 50148

   126 : > Target Intron 4 >>>>  {p}ArgLysMetAlaGluAlaValGlnAsnHisVal :   136
                627 bp           {|}|||||||||||||||||||||||||||||||||
                               ++{p}ArgLysMetAlaGluAlaValGlnAsnHisVal
 50149 : ......................ag{G}AGGAAGATGGCAGAAGCTGTTCAAAATCACGTG : 50804

   137 : LysSerLeuAsnTrpGlyHisArgValGlnLeuGlnAsp{Ar}  >>>> Target Int :   150
         |||||||||||||||||||||||||||||||||||||||{||}           2333 b
         LysSerLeuAsnTrpGlyHisArgValGlnLeuGlnAsp{Ar}++               
 50805 : AAGTCCTTGAACTGGGGCCACCGTGTCCAGCTGCAGGAC{AG}gt............... : 50850

   151 : ron 5 >>>>  {g}LysValLysTyrPheAsnIleLysAlaSerPheValAspGluHis :   165
         p           {|}|||||||||||||||||||||||||||||||||||||||||||||
                   ++{g}LysValLysTyrPheAsnIleLysAlaSerPheValAspGluHis
 50851 : ..........ag{A}AAAGTCAAGTACTTTAACATCAAAGCCAGCTTTGTTGACGAGCAC : 53224

   166 : ThrValCysGlyValAlaLysGlyGlyLysGlu  >>>> Target Intron 6 >>>> :   177
         |||||||||||||||||||||||||||||||||            487 bp         
         ThrValCysGlyValAlaLysGlyGlyLysGlu++                         
 53225 : ACGGTTTGCGGCGTTGCCAAAGGTGGGAAAGAGgt......................... : 53262

   178 :   IleLeuLeuSerAlaAspHisIleIleIleAlaThrGlyGlyArgProArgTyrProT :   196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ++IleLeuLeuSerAlaAspHisIleIleIleAlaThrGlyGlyArgProArgTyrProT
 53263 : agATTCTGCTATCAGCTGACCACATCATCATTGCTACTGGAGGGCGGCCGAGGTACCCCA : 53804

   197 : hrHis  >>>> Target Intron 7 >>>>  IleGluGlyAlaLeuGluTyrGlyIl :   206
         |||||           3763 bp           ||||||||||||||||||||||||||
         hrHis++                         ++IleGluGlyAlaLeuGluTyrGlyIl
 53805 : CGCACgt.........................agATCGAAGGTGCCTTGGAATATGGAAT : 57597

   207 : eThrSerAspAspIlePheTrpLeuLysGluSerProGlyLysThrLeuValValGlyAl :   226
         ||||||||||||||||||||||||||||||||||||||||||||||! !! !:!!  !  
         eThrSerAspAspIlePheTrpLeuLysGluSerProGlyLysThr***GlyLeuProHi
 57598 : CACAAGTGATGACATCTTTTGGCTGAAGGAATCCCCTGGAAAAACGTAAGGCCTGCCGCA : 57657

   227 : aSer{T}  >>>> Target Intron 8 >>>>  {yr}ValAlaLeuGluCysAlaGl :   235
         !:!!{|}           11497 bp          {||}||||||||||||||||||||
         sAla{T}+-                         ++{yr}ValAlaLeuGluCysAlaGl
 57658 : TGCA{T}gg.........................ag{AC}GTGGCCCTGGAGTGTGCTGG : 69181

   236 : yPheLeuThrGlyIleGlyLeuAspThrThrIleMetMetArgSerIleProLeuArgGl :   255
         |||||||||||||||||||||||||||||||:!!|||!!:||||||||||||||||||||
         yPheLeuThrGlyIleGlyLeuAspThrThrValMetIleArgSerIleProLeuArgGl
 69182 : CTTCCTCACTGGGATCGGGCTGGACACTACCGTCATGATACGCAGCATCCCCCTCCGCGG : 69241

   256 : yPheAspGln  >>>> Target Intron 9 >>>>  GlnMetSerSerMetValIle :   265
         ||||||||||           2782 bp           |||||||||||||||||||||
         yPheAspGln++                         ++GlnMetSerSerMetValIle
 69242 : CTTCGACCAGgt.........................agCAAATGTCCTCCATGGTCATA : 72053

   266 : GluHisMetAlaSerHisGlyThrArgPheLeuArgGlyCysAlaProSerArgValArg :   285
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluHisMetAlaSerHisGlyThrArgPheLeuArgGlyCysAlaProSerArgValArg
 72054 : GAGCACATGGCATCTCATGGCACCCGGTTCCTGAGGGGCTGTGCCCCCTCCCGAGTCAGG : 72113

   286 : ArgLeuProAspGlyGlnLeuGlnValThrTrpGluAspSerThrThrGlyLysGluAsp :   305
         |||||||||||||||!!.|||||||||||||||||||||  !||||||||||||||||||
         ArgLeuProAspGlyHisLeuGlnValThrTrpGluAspHisThrThrGlyLysGluAsp
 72114 : AGGCTCCCTGATGGCCACCTGCAGGTCACCTGGGAGGACCACACCACTGGCAAGGAGGAC : 72173

   306 : ThrGlyThrPheAspThrValLeuTrpAlaIle{G}  >>>> Target Intron 10  :   317
         |||||||||||||||||||||||||||||||||{|}           12483 bp     
         ThrGlyThrPheAspThrValLeuTrpAlaIle{G}++                      
 72174 : ACAGGCACCTTCGACACTGTCCTGTGGGCCATA{G}gt...................... : 72212

   318 : >>>>  {ly}ArgValProAspThrArgSerLeuAsnLeuGluLysAlaGlyValAspTh :   334
               {||}||||||||||||||||||||||||||||||||||||||||||||||||||
             ++{ly}ArgValProAspThrArgSerLeuAsnLeuGluLysAlaGlyValAspTh
 72213 : ....ag{GT}CGAGTACCAGACACCAGAAGTCTGAATTTGGAGAAGGCTGGGGTAGATAC : 84743

   335 : rSerProAspThrGlnLysIleLeuValAspSerArgGluAlaThrSerValProHisIl :   354
         ||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||||||
         rSerProAspThrGlnLysIleLeuValAspSerArgGluGlyThrSerValProHisIl
 84744 : TAGCCCCGACACTCAGAAGATCCTGGTGGACTCCCGGGAAGGCACCTCTGTGCCCCACAT : 84803

   355 : eTyrAlaIleGlyAspValValGlu  >>>> Target Intron 11 >>>>  GlyAr :   364
         |||||||||||||||||||||||||            2605 bp           |||||
         eTyrAlaIleGlyAspValValGlu++                          ++GlyAr
 84804 : CTACGCCATTGGTGACGTGGTGGAGgt..........................agGGGCG : 87438

   365 : gProGluLeuThrProIleAlaIleMetAlaGlyArgLeuLeuValGlnArgLeuPheGl :   384
         ||||||||||||||||!  |||||||||||||||||||||||||||||||||||||||||
         gProGluLeuThrProThrAlaIleMetAlaGlyArgLeuLeuValGlnArgLeuPheGl
 87439 : GCCTGAGCTGACACCCACGGCTATCATGGCTGGGAGGCTCCTGGTGCAGCGGCTCTTCGG : 87498

   385 : yGlySerSerAspLeuMetAspTyrAspAsn  >>>> Target Intron 12 >>>>  :   395
         |||||||||||||||||||||||||||||||            351 bp           
         yGlySerSerAspLeuMetAspTyrAspAsn++                          +
 87499 : CGGGTCCTCAGACCTGATGGACTATGACAATgt..........................a : 87880

   396 :  ValProThrThrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluGl :   414
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         +ValProThrThrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluGl
 87881 : gGTTCCCACTACCGTCTTCACCCCGCTGGAGTATGGCTGTGTGGGGCTGTCCGAGGAGGA : 87939

   415 : uAlaValAlaArgHisGlyGlnGluHisValGlu  >>>> Target Intron 13 >> :   426
         ||||||||||||||||||||||||||||||||||            1722 bp       
         uAlaValAlaArgHisGlyGlnGluHisValGlu++                        
 87940 : GGCAGTGGCTCGCCACGGGCAGGAGCATGTTGAGgt........................ : 87977

   427 : >>  ValTyrHisAlaHisTyrLysProLeuGluPheThrValAlaGlyArgAspAlaSe :   444
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
           ++ValTyrHisAlaHisTyrLysProLeuGluPheThrValAlaGlyArgAspAlaSe
 87978 : ..agGTCTATCACGCCCATTATAAACCGCTGGAGTTCACGGTGGCTGGACGGGATGCATC : 89751

   445 : rGlnCysTyrValLys  >>>> Target Intron 14 >>>>  MetValCysLeuAr :   454
         ||||||||||||||||            178 bp            ||||||||||||||
         rGlnCysTyrValLys++                          ++MetValCysLeuAr
 89752 : CCAGTGTTATGTAAAGgt..........................agATGGTGTGCCTGAG : 89959

   455 : gGluProProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValTh :   474
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         gGluProProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValTh
 89960 : GGAGCCCCCGCAGCTGGTGCTGGGCCTGCACTTCCTTGGCCCCAACGCAGGCGAAGTTAC : 90019

   475 : rGlnGlyPheAlaLeuGlyIle{Ly}  >>>> Target Intron 15 >>>>  {s}C :   483
         ||||||||||||||||||||||{||}            855 bp            {|}|
         rGlnGlyPheAlaLeuGlyIle{Ly}++                          ++{s}C
 90020 : TCAAGGATTTGCTCTGGGGATC{AA}gt..........................ag{G}T : 90901

   484 : ysGlyAlaSerTyrAlaGlnValMetArgThrValGlyIleHisProThrCysSerGluG :   503
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ysGlyAlaSerTyrAlaGlnValMetArgThrValGlyIleHisProThrCysSerGluG
 90902 : GTGGGGCCTCCTACGCGCAGGTGATGCGGACCGTGGGTATCCATCCCACATGCTCCGAGG : 90961

   504 : luValValLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGlyCysU :   523
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
         luValValLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGlyCys*
 90962 : AGGTAGTCAAGCTGCGCATCTCCAAGCGCTCAGGCCTGGACCCCACGGTGACAGGCTGCT : 91021

   524 : nkGly :   524
           |||
         **Gly
 91022 : GAGGG : 91026

vulgar: SPP00000138_2.0 0 524 . gi|511782574|gb|CM001960.1|:subseq(5775651,141026) 27552 91026 + 2566 M 34 102 S 0 1 5 0 2 I 0 9878 3 0 2 S 1 2 M 22 66 S 0 1 5 0 2 I 0 11182 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 1147 3 0 2 S 1 2 M 47 141 S 0 2 5 0 2 I 0 623 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 2329 3 0 2 S 1 1 M 26 78 5 0 2 I 0 483 3 0 2 M 21 63 5 0 2 I 0 3759 3 0 2 M 30 90 S 0 1 5 0 2 I 0 11493 3 0 2 S 1 2 M 30 90 5 0 2 I 0 2778 3 0 2 M 58 174 S 0 1 5 0 2 I 0 12479 3 0 2 S 1 2 M 45 135 5 0 2 I 0 2601 3 0 2 M 32 96 5 0 2 I 0 347 3 0 2 M 31 93 5 0 2 I 0 1718 3 0 2 M 24 72 5 0 2 I 0 174 3 0 2 M 32 96 S 0 2 5 0 2 I 0 851 3 0 2 S 1 1 M 42 126
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	gene	27553	91026	2566	+	.	gene_id 1 ; sequence SPP00000138_2.0 ; gene_orientation +
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	27553	27655	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	27553	27655	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	27656	27657	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	27656	37537	.	+	.	intron_id 1
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	37536	37537	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	37538	37606	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	37538	37606	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	37607	37608	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	37607	48792	.	+	.	intron_id 2
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	48791	48792	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	48793	48849	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	48793	48849	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	48850	48851	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	48850	50000	.	+	.	intron_id 3
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	49999	50000	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	50001	50145	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	50001	50145	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	50146	50147	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	50146	50772	.	+	.	intron_id 4
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	50771	50772	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	50773	50847	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	50773	50847	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	50848	50849	.	+	.	intron_id 5 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	50848	53180	.	+	.	intron_id 5
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	53179	53180	.	+	.	intron_id 4 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	53181	53259	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	53181	53259	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	53260	53261	.	+	.	intron_id 6 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	53260	53746	.	+	.	intron_id 6
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	53745	53746	.	+	.	intron_id 5 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	53747	53809	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	53747	53809	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	53810	53811	.	+	.	intron_id 7 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	53810	57572	.	+	.	intron_id 7
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	57571	57572	.	+	.	intron_id 6 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	57573	57663	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	57573	57663	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	57664	57665	.	+	.	intron_id 8 ; splice_site "GG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	57664	69160	.	+	.	intron_id 8
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	69159	69160	.	+	.	intron_id 7 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	69161	69252	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	69161	69252	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	69253	69254	.	+	.	intron_id 9 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	69253	72034	.	+	.	intron_id 9
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	72033	72034	.	+	.	intron_id 8 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	72035	72209	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	72035	72209	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	72210	72211	.	+	.	intron_id 10 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	72210	84692	.	+	.	intron_id 10
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	84691	84692	.	+	.	intron_id 9 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	84693	84829	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	84693	84829	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	84830	84831	.	+	.	intron_id 11 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	84830	87434	.	+	.	intron_id 11
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	87433	87434	.	+	.	intron_id 10 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	87435	87530	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	87435	87530	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	87531	87532	.	+	.	intron_id 12 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	87531	87881	.	+	.	intron_id 12
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	87880	87881	.	+	.	intron_id 11 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	87882	87974	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	87882	87974	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	87975	87976	.	+	.	intron_id 13 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	87975	89696	.	+	.	intron_id 13
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	89695	89696	.	+	.	intron_id 12 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	89697	89768	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	89697	89768	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	89769	89770	.	+	.	intron_id 14 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	89769	89946	.	+	.	intron_id 14
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	89945	89946	.	+	.	intron_id 13 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	89947	90044	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	89947	90044	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice5	90045	90046	.	+	.	intron_id 15 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	intron	90045	90899	.	+	.	intron_id 15
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	splice3	90898	90899	.	+	.	intron_id 14 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	cds	90900	91026	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	exon	90900	91026	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(5775651,141026)	exonerate:protein2genome:local	similarity	27553	91026	2566	+	.	alignment_id 1 ; Query SPP00000138_2.0 ; Align 27553 1 102 ; Align 37540 36 66 ; Align 48795 59 54 ; Align 50003 78 141 ; Align 50774 126 72 ; Align 53182 151 78 ; Align 53747 177 63 ; Align 57573 198 90 ; Align 69163 229 90 ; Align 72035 259 174 ; Align 84695 318 135 ; Align 87435 363 96 ; Align 87882 395 93 ; Align 89697 426 72 ; Align 89947 450 96 ; Align 90901 483 126
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis