Command line: [exonerate -m p2g --showtargetgff -q TR1.1.fa.U_to_X -t gi|511782582|gb|CM001952.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000129_2.0 # Protein # Thioredoxin reductase 1 (TR1) # Human (Homo sapiens) 
        Target: gi|511782582|gb|CM001952.1|:subseq(99357652,290257) Chlorocebus sabaeus isolate 1994-021 chromosome 11, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 3206
   Query range: 0 -> 649
  Target range: 64860 -> 200411

      1 : MetGlyCysAlaGluGlyLysAlaValAlaAlaAlaAlaProThrGluLeuGlnThrL :     20
          |||||||||.!!||||||||||||||||||!.!||||||||| !!||||||!!.||||
          MetGlyCysThrGluGlyLysAlaValAlaValAlaAlaProProGluLeuHisThrL
  64861 : ATGGGCTGCACCGAGGGCAAGGCGGTGGCGGTAGCCGCCCCACCGGAGCTGCACACCA :  64918

     21 : ysGlyLysAsnGlyAspGlyArgArgArgSer{A}  >>>> Target Intron 1  :     31
          ||||||||||||||! !|||||||||! !|||{|}           35049 bp    
          ysGlyLysAsnGlyGlyGlyArgArgThrSer{A}++                     
  64919 : AAGGCAAGAACGGTGGTGGCCGCCGTACGTCA{G}gt..................... :  64954

     32 : >>>>  {la}LysAspHisHisProGlyLysThrLeuProGluAsnProAlaGlyPhe :     47
                {||}||||||||||||||||||||||||||||||||||||||||||||||||
              ++{la}LysAspHisHisProGlyLysThrLeuProGluAsnProAlaGlyPhe
  64955 : ....ag{CT}AAAGATCATCACCCTGGTAAAACTTTGCCAGAGAACCCAGCAGGATTC : 100048

     48 : ThrSerThrAlaThrAlaAspSerArgAlaLeuLeuGlnAlaTyrIleAspGlyHisS :     67
          |||||||||||||||||||||  !||||||||||||||||||||||||||||||||||
          ThrSerThrAlaThrAlaAspLeuArgAlaLeuLeuGlnAlaTyrIleAspGlyHisS
 100049 : ACCAGCACGGCCACTGCAGACCTCAGAGCCCTGCTTCAGGCCTATATAGACGGTCACT : 100108

     68 : erValValIlePheSerArgSerThrCysThrArgCysThrGlu  >>>> Target  :     82
          ||||||||||||||||||||||||||||||||||||||.!!|||           651
          erValValIlePheSerArgSerThrCysThrArgCysAlaGlu++            
 100109 : CTGTGGTCATCTTCAGTAGGTCCACATGCACACGCTGTGCTGAGgt............ : 100155

     83 : Intron 2 >>>>  ValLysLysLeuPheLysSerLeuCysValProTyrPheValL :     96
          7 bp           |||||||||||||||||||||||||||||||||||||||||||
                       ++ValLysLysLeuPheLysSerLeuCysValProTyrPheValL
 100156 : .............agGTAAAGAAGTTATTTAAATCTCTGTGTGTTCCTTATTTTGTGC : 106712

     97 : euGluLeuAspGlnThr{G}  >>>> Target Intron 3 >>>>  {lu}AspGl :    104
          |||||||||||||||||{|}           28372 bp          {||} !!||
          euGluLeuAspGlnThr{G}++                         ++{lu}TyrGl
 106713 : TTGAACTTGATCAAACA{G}gt.........................ag{AG}TACGG : 135108

    105 : yArgAlaLeuGluGlyThrLeuSerGluLeuAlaAlaGluThrAspLeuProValVal :    123
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          yArgAlaLeuGluGlyThrLeuSerGluLeuAlaAlaGluThrAspLeuProValVal
 135109 : TCGGGCCCTGGAAGGAACGCTCTCGGAATTGGCCGCGGAAACCGATCTGCCCGTTGTG : 135165

    124 : PheValLysGlnArgLysIleGlyGlyHisGlyProThrLeuLys  >>>> Target :    139
          |||||||||||||||||||||||||||||||||||||||||||||           25
          PheValLysGlnArgLysIleGlyGlyHisGlyProThrLeuLys++           
 135166 : TTTGTGAAACAGAGAAAGATAGGCGGCCATGGTCCAACCTTGAAGgt........... : 135215

    140 :  Intron 4 >>>>  AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsn :    152
          345 bp          ||||||||||||||||||||||||||||||||||||||||||
                        ++AlaTyrGlnGluGlyArgLeuGlnLysLeuLeuLysMetAsn
 135216 : ..............agGCTTATCAGGAGGGCAGACTTCAAAAGCTACTAAAAATGAAC : 160597

    153 : GlyProGluAspLeuProLysSerTyrAspTyrAspLeuIleIleIleGlyGlyGlyS :    172
          ||||||||||||||||||:!!|||||||||||||||||||||||||||||||||||||
          GlyProGluAspLeuProGluSerTyrAspTyrAspLeuIleIleIleGlyGlyGlyS
 160598 : GGCCCTGAGGATCTTCCCGAGTCCTATGACTATGACCTTATCATCATTGGAGGTGGCT : 160657

    173 : erGlyGlyLeuAlaAlaAlaLys  >>>> Target Intron 5 >>>>  GluAla :    181
          |||||||||||||||||||||||           1786 bp           ||||||
          erGlyGlyLeuAlaAlaAlaLys+-                         ++GluAla
 160658 : CAGGAGGCCTGGCAGCTGCTAAGgc.........................agGAGGCA : 162470

    182 : AlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrProLeuGlyT :    201
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaGlnTyrGlyLysLysValMetValLeuAspPheValThrProThrProLeuGlyT
 162471 : GCCCAATATGGCAAGAAGGTGATGGTCCTGGACTTTGTCACTCCCACCCCTCTTGGAA : 162530

    202 : hrArgTrp{G}  >>>> Target Intron 6 >>>>  {ly}LeuGlyGlyThrCy :    209
          ||||||||{|}           2456 bp           {||}||||||||||||||
          hrArgTrp{G}++                         ++{ly}LeuGlyGlyThrCy
 162531 : CTAGATGG{G}gt.........................ag{GT}CTCGGAGGAACATG : 165010

    210 : sValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGln :    228
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          sValAsnValGlyCysIleProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGln
 165011 : TGTGAATGTGGGTTGCATACCTAAAAAACTGATGCATCAAGCAGCTTTATTAGGGCAA : 165067

    229 : AlaLeuGlnAspSerArgAsnTyrGlyTrpLysValGluGluThr{V}  >>>> Tar :    244
          ||||||:!!||||||||||||||||||||||||||||||||||||{|}          
          AlaLeuGluAspSerArgAsnTyrGlyTrpLysValGluGluThr{V}++        
 165068 : GCCCTAGAAGACTCTCGAAACTATGGCTGGAAAGTTGAGGAGACA{G}gt........ : 165118

    245 : get Intron 7 >>>>  {al}LysHisAspTrpAspArgMetIleGluAlaValGl :    256
           3522 bp           {||}|||||||||||||||||||||||||||||||||||
                           ++{al}LysHisAspTrpAspArgMetIleGluAlaValGl
 165119 : .................ag{TT}AAGCATGATTGGGACAGAATGATAGAAGCTGTACA : 168673

    257 : nAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysVal :    275
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          nAsnHisIleGlySerLeuAsnTrpGlyTyrArgValAlaLeuArgGluLysLysVal
 168674 : GAATCACATTGGTTCTTTGAATTGGGGCTACCGAGTAGCTCTGCGGGAGAAAAAAGTT : 168730

    276 : ValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys  >>>> Tar :    292
          ||||||||||||||||||||||||||||||||||||||||||||||||          
          ValTyrGluAsnAlaTyrGlyGlnPheIleGlyProHisArgIleLys++        
 168731 : GTCTATGAGAATGCTTACGGGCAGTTTATTGGTCCTCACAGGATTAAGgt........ : 168783

    293 : get Intron 8 >>>>  AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAla :    304
            399 bp           |||||||||||||||||||||||||||||||||||||||
                           ++AlaThrAsnAsnLysGlyLysGluLysIleTyrSerAla
 168784 : .................agGCAACAAATAATAAAGGCAAAGAAAAAATTTATTCAGCA : 169216

    305 : GluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspL :    324
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluArgPheLeuIleAlaThrGlyGluArgProArgTyrLeuGlyIleProGlyAspL
 169217 : GAGAGATTTCTCATTGCCACTGGTGAAAGACCACGTTACTTGGGCATCCCTGGTGACA : 169276

    325 : ysGluTyrCysIleSer{Se}  >>>> Target Intron 9 >>>>  {r}AspAs :    332
          |||||||||||||||||{||}           1606 bp           {|}|||||
          ysGluTyrCysIleSer{Se}++                         ++{r}AspAs
 169277 : AAGAATACTGCATTAGC{AG}gt.........................ag{T}GATGA : 170906

    333 : pLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrVal :    351
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          pLeuPheSerLeuProTyrCysProGlyLysThrLeuValValGlyAlaSerTyrVal
 170907 : TCTTTTCTCCTTGCCTTACTGCCCGGGTAAGACCCTGGTCGTTGGAGCATCCTATGTC : 170963

    352 : AlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValA :    371
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          AlaLeuGluCysAlaGlyPheLeuAlaGlyIleGlyLeuAspValThrValMetValA
 170964 : GCTTTGGAGTGTGCTGGATTTCTTGCTGGTATTGGTTTAGATGTCACTGTTATGGTTA : 171023

    372 : rgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMe :    390
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rgSerIleLeuLeuArgGlyPheAspGlnAspMetAlaAsnLysIleGlyGluHisMe
 171024 : GGTCCATTCTTCTCAGAGGATTTGACCAGGACATGGCCAACAAAATTGGTGAACACAT : 171080

    391 : tGluGluHisGlyIleLysPheIleArgGlnPheValProIleLys  >>>> Targe :    406
          ||||||||||||||||||||||||||||||||||||||||||||||            
          tGluGluHisGlyIleLysPheIleArgGlnPheValProIleLys++          
 171081 : GGAAGAACATGGCATCAAGTTTATAAGACAGTTTGTACCAATTAAAgt.......... : 171130

    407 : t Intron 10 >>>>  ValGluGlnIleGluAlaGlyThrProGlyArgLeuArgV :    419
          2806 bp           :!!||||||||||||!.!||||||||||||||||||||||
                          ++IleGluGlnIleGluValGlyThrProGlyArgLeuArgV
 171131 : ................agATTGAACAAATTGAAGTGGGGACACCAGGCCGACTCAGAG : 173973

    420 : alValAlaGlnSerThrAsnSerGluGluIleIleGluGlyGluTyrAsnThr  >>> :    437
          |||||||||||||||||! !|||||||||||||||||||||||||||||||||     
          alValAlaGlnSerThrIleSerGluGluIleIleGluGlyGluTyrAsnThr++   
 173974 : TAGTAGCTCAGTCCACCATTAGTGAGGAAATCATTGAAGGAGAGTATAATACGgt... : 174029

    438 : > Target Intron 11 >>>>  ValMetLeuAlaIleGlyArgAspAlaCysThr :    447
                 1510 bp           |||:!!|||||||||||||||||||||||||||
                                 ++ValLeuLeuAlaIleGlyArgAspAlaCysThr
 174030 : .......................agGTGTTGCTGGCAATAGGAAGAGATGCTTGCACA : 175567

    448 : ArgLysIleGlyLeuGluThrValGlyValLysIleAsnGlu{Ly}  >>>> Targe :    462
          ||||||||||||||||||||||||||||||||||||||||||{||}            
          ArgLysIleGlyLeuGluThrValGlyValLysIleAsnGlu{Ly}++          
 175568 : AGAAAAATTGGCTTAGAAACTGTAGGGGTGAAGATAAATGAA{AA}gt.......... : 175616

    463 : t Intron 12 >>>>  {s}ThrGlyLysIleProValThrAspGluGluGlnThrA :    475
          1318 bp           {|}|||||||||||||||||||||||||||||||||||||
                          ++{s}ThrGlyLysIleProValThrAspGluGluGlnThrA
 175617 : ................ag{G}ACTGGAAAAATACCTGTCACAGATGAAGAACAGACCA : 176969

    476 : snValProTyrIleTyrAlaIleGlyAspIleLeuGluAspLysValGluLeuThrPr :    494
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          snValProTyrIleTyrAlaIleGlyAspIleLeuGluAspLysValGluLeuThrPr
 176970 : ATGTGCCTTACATCTATGCCATTGGCGATATATTGGAGGATAAGGTGGAGCTCACCCC : 177026

    495 : oValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThrVal :    513
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          oValAlaIleGlnAlaGlyArgLeuLeuAlaGlnArgLeuTyrAlaGlySerThrVal
 177027 : AGTTGCAATCCAGGCAGGAAGATTGCTGGCTCAGAGGCTCTATGCAGGTTCCACTGTC : 177083

    514 : Lys  >>>> Target Intron 13 >>>>  CysAspTyrGluAsnValProThrT :    523
          |||            4022 bp           |||||||||||||||||||||||||
          Lys++                          ++CysAspTyrGluAsnValProThrT
 177084 : AAGgt..........................agTGTGACTATGAAAATGTTCCAACCA : 181135

    524 : hrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGl :    542
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          hrValPheThrProLeuGluTyrGlyAlaCysGlyLeuSerGluGluLysAlaValGl
 181136 : CTGTATTTACTCCTTTGGAATACGGTGCTTGTGGCCTTTCTGAGGAGAAAGCTGTGGA : 181192

    543 : uLysPheGlyGluGluAsnIleGlu  >>>> Target Intron 14 >>>>  Val :    551
          |||||||||||||||||||||||||            3086 bp           |||
          uLysPheGlyGluGluAsnIleGlu++                          ++Val
 181193 : GAAGTTTGGGGAAGAAAATATTGAGgt..........................agGTT : 184305

    552 : TyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLysC :    571
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          TyrHisSerTyrPheTrpProLeuGluTrpThrIleProSerArgAspAsnAsnLysC
 184306 : TACCATAGTTACTTTTGGCCATTGGAATGGACGATTCCATCAAGAGATAACAACAAAT : 184365

    572 : ysTyrAlaLysIleIleCysAsnThrLysAspAsn  >>>> Target Intron 15 :    583
          |||||||||||||||||||||||||||||||||||            5719 bp    
          ysTyrAlaLysIleIleCysAsnThrLysAspAsn++                     
 184366 : GTTATGCAAAAATAATCTGTAATACTAAAGACAATgt..................... : 184403

    584 :  >>>>  GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThr :    599
                 |||||||||||||||||||||||||||||||||||||||||||||||||||
               ++GluArgValValGlyPheHisValLeuGlyProAsnAlaGlyGluValThr
 184404 : .....agGAACGTGTTGTGGGCTTTCACGTACTGGGTCCAAATGCTGGAGAAGTTACA : 190168

    600 : GlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrI :    619
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlnGlyPheAlaAlaAlaLeuLysCysGlyLeuThrLysLysGlnLeuAspSerThrI
 190169 : CAAGGCTTCGCAGCTGCACTCAAATGTGGACTGACCAAAAAGCAGCTGGACAGCACAA : 190228

    620 : leGlyIleHisProValCysAlaGlu  >>>> Target Intron 16 >>>>  Va :    628
          ||||||||||||||||||||||||||           10091 bp           ||
          leGlyIleHisProValCysAlaGlu++                          ++Va
 190229 : TTGGAATCCACCCTGTCTGTGCAGAGgt..........................agGT : 200346

    629 : lPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCys :    647
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          lPheThrThrLeuSerValThrLysArgSerGlyAlaSerIleLeuGlnAlaGlyCys
 200347 : ATTCACAACATTGTCTGTGACCAAGCGCTCTGGGGCAAGCATCCTCCAGGCTGGCTGC : 200403

    648 : UnkGly :    649
             |||
          ***Gly
 200404 : TGAGGT : 200411

vulgar: SPP00000129_2.0 0 649 . gi|511782582|gb|CM001952.1|:subseq(99357652,290257) 64860 200411 + 3206 M 30 90 S 0 1 5 0 2 I 0 35045 3 0 2 S 1 2 M 50 150 5 0 2 I 0 6513 3 0 2 M 20 60 S 0 1 5 0 2 I 0 28368 3 0 2 S 1 2 M 36 108 5 0 2 I 0 25341 3 0 2 M 41 123 5 0 2 I 0 1782 3 0 2 M 24 72 S 0 1 5 0 2 I 0 2452 3 0 2 S 1 2 M 39 117 S 0 1 5 0 2 I 0 3518 3 0 2 S 1 2 M 47 141 5 0 2 I 0 395 3 0 2 M 38 114 S 0 2 5 0 2 I 0 1602 3 0 2 S 1 1 M 75 225 5 0 2 I 0 2802 3 0 2 M 31 93 5 0 2 I 0 1506 3 0 2 M 25 75 S 0 2 5 0 2 I 0 1314 3 0 2 S 1 1 M 52 156 5 0 2 I 0 4018 3 0 2 M 36 108 5 0 2 I 0 3082 3 0 2 M 32 96 5 0 2 I 0 5715 3 0 2 M 45 135 5 0 2 I 0 10087 3 0 2 M 22 66
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-11
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	gene	64861	200411	3206	+	.	gene_id 1 ; sequence SPP00000129_2.0 ; gene_orientation +
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	64861	64951	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	64861	64951	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	64952	64953	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	64952	100000	.	+	.	intron_id 1
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	99999	100000	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	100001	100152	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	100001	100152	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	100153	100154	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	100153	106669	.	+	.	intron_id 2
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	106668	106669	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	106670	106730	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	106670	106730	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	106731	106732	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	106731	135102	.	+	.	intron_id 3
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	135101	135102	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	135103	135212	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	135103	135212	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	135213	135214	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	135213	160557	.	+	.	intron_id 4
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	160556	160557	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	160558	160680	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	160558	160680	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	160681	160682	.	+	.	intron_id 5 ; splice_site "GC"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	160681	162466	.	+	.	intron_id 5
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	162465	162466	.	+	.	intron_id 4 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	162467	162539	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	162467	162539	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	162540	162541	.	+	.	intron_id 6 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	162540	164995	.	+	.	intron_id 6
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	164994	164995	.	+	.	intron_id 5 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	164996	165115	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	164996	165115	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	165116	165117	.	+	.	intron_id 7 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	165116	168637	.	+	.	intron_id 7
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	168636	168637	.	+	.	intron_id 6 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	168638	168780	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	168638	168780	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	168781	168782	.	+	.	intron_id 8 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	168781	169179	.	+	.	intron_id 8
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	169178	169179	.	+	.	intron_id 7 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	169180	169295	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	169180	169295	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	169296	169297	.	+	.	intron_id 9 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	169296	170901	.	+	.	intron_id 9
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	170900	170901	.	+	.	intron_id 8 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	170902	171127	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	170902	171127	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	171128	171129	.	+	.	intron_id 10 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	171128	173933	.	+	.	intron_id 10
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	173932	173933	.	+	.	intron_id 9 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	173934	174026	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	173934	174026	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	174027	174028	.	+	.	intron_id 11 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	174027	175536	.	+	.	intron_id 11
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	175535	175536	.	+	.	intron_id 10 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	175537	175613	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	175537	175613	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	175614	175615	.	+	.	intron_id 12 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	175614	176931	.	+	.	intron_id 12
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	176930	176931	.	+	.	intron_id 11 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	176932	177088	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	176932	177088	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	177089	177090	.	+	.	intron_id 13 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	177089	181110	.	+	.	intron_id 13
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	181109	181110	.	+	.	intron_id 12 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	181111	181218	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	181111	181218	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	181219	181220	.	+	.	intron_id 14 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	181219	184304	.	+	.	intron_id 14
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	184303	184304	.	+	.	intron_id 13 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	184305	184400	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	184305	184400	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	184401	184402	.	+	.	intron_id 15 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	184401	190119	.	+	.	intron_id 15
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	190118	190119	.	+	.	intron_id 14 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	190120	190254	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	190120	190254	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice5	190255	190256	.	+	.	intron_id 16 ; splice_site "GT"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	intron	190255	200345	.	+	.	intron_id 16
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	splice3	200344	200345	.	+	.	intron_id 15 ; splice_site "AG"
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	cds	200346	200411	.	+	.	
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	exon	200346	200411	.	+	.	insertions 0 ; deletions 0
gi|511782582|gb|CM001952.1|:subseq(99357652,290257)	exonerate:protein2genome:local	similarity	64861	200411	3206	+	.	alignment_id 1 ; Query SPP00000129_2.0 ; Align 64861 1 90 ; Align 100003 32 150 ; Align 106670 82 60 ; Align 135105 103 108 ; Align 160558 139 123 ; Align 162467 180 72 ; Align 164998 205 117 ; Align 168640 245 141 ; Align 169180 292 114 ; Align 170903 331 225 ; Align 173934 406 93 ; Align 175537 437 75 ; Align 176933 463 156 ; Align 181111 515 108 ; Align 184305 551 96 ; Align 190120 583 135 ; Align 200346 628 66
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis