Output_id:  SelW.4.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782587|gb|CM001946.1|
-Program        genewise
-Query name     ref|NP_874363.1| selenoprotein V [Homo sapiens]
-Query range    1-346      length:346   coverage: 1.0
-Profile range  1-433      length:494   coverage: 0.88    sec_positions: [288, 291]
-ASI:           0.1558     (ignoring gaps: 0.2622)
-AWSIc:         0.4699     Z-score: -0.537
-AWSIw:         0.4671     Z-score: -0.75
-State          kept

------- alignment -------
Query   MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTP
        ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    ||  |||| ||| |||||||||| |||||| ||||||||||
Target  MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTQTPVLTPSPARLPALVQPPAPAHIPTQVPTPALARIPGLVPPPARAWIPTPVPTP
        aaacgcacgcttgcatatgcgtacacacacccacacgcacacacacacgcactcgcccgcgcccgcgcacacgcacgcgcacgcgcccgcgtacacgcac
        taaacgcccccccgcccctgcccccgcccctgcccctgcgcctgcaccttcccccgtccttacccccatccatcccctcgtcgttccccgcgtccctccc
        gtcgggcacccgggcacacgttcgcgagtacgcgtacgtgcccgcgtacgtgtgcgtctgcgtctacccctgcgtctgcgactgtggttgcgcttgcgtt
                                                                                                            

Query   VPVRNPTPVPTPARTLTPPVRVPAPAPA----QLLAGIRAALPVLDSYLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRT
          ||||||| ||||||||||||||||||    |/||||| ||| |||| | ||||||||||||| |  |||||||||||||||||||||||| || |  |
Target  ARVRNPTPVRTPARTLTPPVRVPAPAPAPDPAQVLAGIRTALPALDSYTARALPLDPPPEPAPEPPFSPEEDPEPAPSLKLIPSVSSEAGPALGPFPAHT
        gcgcacacgcacgcacaccgcgcgcgcgcgcgcgcggacagccgtgttagcgcctgcccgcgcgccttcgggcgcgcacacactgtagggcgcgctcgca
        cgtgaccctgcccgctccctgtcccccccaccattcgtgcctcctacaccgctctacccacccacctccaaacacccgtattcctcgacgcctgctccac
        tccgcatgcgtgtgcgttacgcacacacacccgcgggtgcgcccgcccgcgcatgtgcgattgggttgcggctggggcggccggcccgtgccgcctctct
                                                                                                            

Query   PLAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSAISLQNCTETFPSSSENFALDKRVLIRVTYU <---Intron---> GLUSYSLR <
        |||||| |||||||||||||| ||||| ||||||/|||||||| /|||| |||  |/||||||||||||||||  <   1861nt   > |||||||| <
Target  PLAANSSGPTLDFTFRADPSATGLADPHIPSPVPAPILGTIPSTLSLQNSTETLVSTSENFALDKRVLIRVTYC                GLUSYSLR  
        ccggattgcacgtataggctgagcggccacacgcgcacgaactacttcatagatgtaagatgcgaagcacgatt                gctatacc  
        ctccaccgcctatctgcaccccgtcacatcgctcccttgctccctctaaccacttccgaatctaagtttgtcag   gt     ag    gtggagtg  
        tgcgcacgccgccccgacggctggatcctcctccgccggccggcccagttgacgccccaccggcggcgtagcc                tccactctg  
                                                                                 *                  *       

Query   ---Intron---> YILLKKSLEQQFPNHLLF <---Intron---> EEDRAAQATGEFEVFVNGRLVHSKK <---Intron---> RGDGFVNESRL
           107nt    > ||||| |||||||||||| <   109nt    > ||||||||||||||||||||||||| <    93nt    > ||||||||| |
Target                YILLKNSLEQQFPNHLLF                EEDRAAQATGEFEVFVNGRLVHSKK                RGDGFVNESGL
                      taccaaacgcctcaccct                gggaggcgaggtggtgagacgctaa                agggtgagtgc
         gt     ag    atttaagtaaatcaattt   gt     ag    aaagccaccgatatttaggttacaa   gt     ag    ggagttaacgt
                      ctagaccgggatatcact                ggcatcgtaggtggtgcgagctcgg                gttctgcgtgg
                                                                                                            

Query   QKIVSVIDEEIKKR
        ||||||| ||||||
Target  QKIVSVIYEEIKKR
        caagagatggaaaa
        aattgttaaataag
        gatgccctggcgag
                      
------- positions -------
Exon 1    34122715     34123535
Exon 2    34125397     34125421
Exon 3    34125529     34125582
Exon 4    34125692     34125766
Exon 5    34125860     34125934

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *