Command line: [exonerate -m p2g --showtargetgff -q SelV.fa.U_to_X -t gi|511782587|gb|CM001946.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens) 
        Target: gi|511782587|gb|CM001946.1|:subseq(34073123,102811) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 1416
   Query range: 0 -> 346
  Target range: 49591 -> 52811

     1 : MetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerValArg :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSerValArg
 49592 : ATGAATAACCAGGCGCGGACCCCAGCCCCCTCCTCGGCGCGGACCTCAACCTCAGTCCGG : 49649

    21 : AlaSerThrProThrArgThrProThrProLeuArgThrProThrProValArgThrArg :    40
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaSerThrProThrArgThrProThrProLeuArgThrProThrProValArgThrArg
 49650 : GCTTCTACCCCGACCCGGACACCGACTCCACTCCGGACCCCGACTCCAGTCCGGACTCGG : 49709

    41 : ThrProIleArgThrLeuThrProValLeuThrProSerProAlaGlyThrSerProLeu :    60
         |||||||||||||||! !||||||||||||||||||||||||||| !!  ! !! !!|||
         ThrProIleArgThrGlnThrProValLeuThrProSerProAlaArgLeuProAlaLeu
 49710 : ACCCCCATCCGGACCCAGACTCCAGTCCTGACTCCGTCTCCGGCCCGGCTTCCCGCTCTG : 49769

    61 : ValLeuThrProAlaProAlaGlnIleProThrLeuValProThrProAlaLeuAlaArg :    80
         |||! ! !!||||||||||||!!.|||||||||! !||||||||||||||||||||||||
         ValGlnProProAlaProAlaHisIleProThrGlnValProThrProAlaLeuAlaArg
 49770 : GTCCAGCCTCCCGCTCCAGCCCACATCCCCACTCAGGTCCCGACTCCCGCTCTGGCCCGG : 49829

    81 : IleProArgLeuValProProProAlaProAlaTrpIleProThrProValProThrPro :   100
         |||||| !!||||||||||||||||||! !||||||||||||||||||||||||||||||
         IleProGlyLeuValProProProAlaArgAlaTrpIleProThrProValProThrPro
 49830 : ATACCCGGTCTGGTTCCGCCGCCTGCTCGGGCCTGGATCCCTACTCCGGTCCCGACTCCT : 49889

   101 : ValProValArgAsnProThrProValProThrProAlaArgThrLeuThrProProVal :   120
         !.!! !|||||||||||||||||||||! !||||||||||||||||||||||||||||||
         AlaArgValArgAsnProThrProValArgThrProAlaArgThrLeuThrProProVal
 49890 : GCTCGCGTCCGGAACCCAACTCCGGTCCGGACTCCGGCTCGGACCCTGACTCCTCCAGTC : 49949

   121 : ArgValProAlaProAla<-><-><-><->ProAlaGlnLeuLeuAlaGlyIleArgAla :   136
         ||||||||||||||||||            |||||||||:!!|||||||||||||||.!!
         ArgValProAlaProAlaProAlaProAspProAlaGlnValLeuAlaGlyIleArgThr
 49950 : CGGGTCCCAGCCCCAGCCCCAGCCCCAGACCCCGCCCAGGTCCTGGCGGGGATTCGGACC : 50009

   137 : AlaLeuProValLeuAspSerTyrLeuAlaProAlaLeuProLeuAspProProProGlu :   156
         |||||||||!.!||||||||||||  !|||! !|||||||||||||||||||||||||||
         AlaLeuProAlaLeuAspSerTyrThrAlaArgAlaLeuProLeuAspProProProGlu
 50010 : GCGCTCCCCGCCTTGGACTCCTACACGGCCCGGGCCCTACCTTTGGATCCGCCCCCGGAA : 50069

   157 : ProAlaProGluLeuProLeuLeuProGluGluAspProGluProAlaProSerLeuLys :   176
         ||||||||||||! !|||!!!! !||||||||||||||||||||||||||||||||||||
         ProAlaProGluProProPheSerProGluGluAspProGluProAlaProSerLeuLys
 50070 : CCTGCTCCGGAGCCGCCTTTTTCGCCCGAGGAGGACCCTGAGCCGGCGCCGAGCCTGAAG : 50129

   177 : LeuIleProSerValSerSerGluAlaGlyProAlaProGlyProLeuProThrArgThr :   196
         ||||||||||||||||||||||||||||||||||||! !||||||!!!|||.!!!.!|||
         LeuIleProSerValSerSerGluAlaGlyProAlaLeuGlyProPheProAlaHisThr
 50130 : CTCATCCCGTCGGTCTCCAGCGAGGCTGGGCCCGCCCTGGGCCCCTTTCCCGCTCACACT : 50189

   197 : ProLeuAlaAlaAsnSerProGlyProThrLeuAspPheThrPheArgAlaAspProSer :   216
         |||||||||||||||||| !!|||||||||||||||||||||||||||||||||||||||
         ProLeuAlaAlaAsnSerSerGlyProThrLeuAspPheThrPheArgAlaAspProSer
 50190 : CCTCTGGCCGCGAACTCATCCGGGCCCACCCTGGACTTCACCTTCAGGGCAGACCCGTCG : 50249

   217 : AlaIleGlyLeuAlaAspProProIleProSerProValProSerProIleLeuGlyThr :   236
         |||! !|||||||||||||||! !||||||||||||||||||:!!|||||||||||||||
         AlaThrGlyLeuAlaAspProHisIleProSerProValProAlaProIleLeuGlyThr
 50250 : GCCACTGGGCTGGCAGATCCCCACATTCCCAGCCCTGTCCCCGCGCCCATCCTGGGGACC : 50309

   237 : IleProSerAlaIleSerLeuGlnAsnCysThrGluThrPheProSerSerSerGluAsn :   256
         |||||||||.!!:!!||||||||||||! !|||||||||!!.  !|||!!!|||||||||
         IleProSerThrLeuSerLeuGlnAsnSerThrGluThrLeuValSerThrSerGluAsn
 50310 : ATCCCGTCGACCCTCTCCTTACAGAATTCTACGGAAACCTTGGTCTCCACCAGCGAAAAC : 50369

   257 : PheAlaLeuAspLysArgValLeuIleArgValThrTyr{Cy}  >>>> Target Int :   270
         |||||||||||||||||||||||||||||||||||||||{||}           1963 b
         PheAlaLeuAspLysArgValLeuIleArgValThrTyr{Cy}++               
 50370 : TTCGCGCTGGACAAGAGGGTCCTGATTCGAGTGACCTAC{TG}gt............... : 50415

   271 : ron 1 >>>>  {s}GlyLeuUnkSerTyrSer-----LeuArgTyrIleLeuLeuLysL :   284
         p           {|}! !! !   !!!  !|||#####! !!:!|||||||||||||||!
                   -+{s}AspCysMetThrProSer#####ProGlnTyrIleLeuLeuLysA
 50416 : ..........tg{C}GACTGCATGACCCCTTCTCCTGCCCTCAGTACATTCTACTGAAAA : 52421

   285 : ysSerLeuGluGlnGlnPheProAsnHisLeuLeuPhe  >>>> Target Intron 2 :   297
         !.||||||||||||||||||||||||||||||||||||            109 bp    
         snSerLeuGluGlnGlnPheProAsnHisLeuLeuPhe++                    
 52422 : ACAGCCTGGAGCAGCAATTTCCAAATCACCTACTCTTTgt.................... : 52462

   298 :  >>>>  GluGluAspArgAlaAlaGlnAlaThrGlyGluPheGluValPheValAsnGl :   314
                |||||||||||||||||||||||||||||||||||||||||||||||||||||
              ++GluGluAspArgAlaAlaGlnAlaThrGlyGluPheGluValPheValAsnGl
 52463 : .....agGAGGAGGACAGAGCTGCCCAGGCTACAGGGGAGTTTGAGGTGTTTGTGAACGG : 52620

   315 : yArgLeuValHisSerLysLys  >>>> Target Intron 3 >>>>  ArgGlyAsp :   324
         ||||||||||||||||||||||            93 bp            |||||||||
         yArgLeuValHisSerLysLys++                         ++ArgGlyAsp
 52621 : GAGACTGGTCCATTCCAAGAAGgt.........................agAGGGGTGAT : 52743

   325 : GlyPheValAsnGluSerArgLeuGlnLysIleValSerValIleAspGluGluIleLys :   344
         |||||||||||||||||| !!|||||||||||||||||||||||| !!||||||||||||
         GlyPheValAsnGluSerGlyLeuGlnLysIleValSerValIleTyrGluGluIleLys
 52744 : GGCTTTGTGAACGAGTCTGGGCTGCAGAAAATTGTGAGCGTCATCTATGAGGAGATCAAG : 52803

   345 : LysArg :   346
         ||||||
         LysArg
 52804 : AAAAGG : 52811

vulgar: SPP00000123_2.0 0 346 . gi|511782587|gb|CM001946.1|:subseq(34073123,102811) 49591 52811 + 1416 M 126 378 G 0 12 M 143 429 S 0 2 5 0 2 I 0 1959 3 0 2 S 1 1 M 6 18 F 0 5 M 20 60 5 0 2 I 0 105 3 0 2 M 25 75 5 0 2 I 0 89 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	gene	49592	52811	1416	+	.	gene_id 1 ; sequence SPP00000123_2.0 ; gene_orientation +
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	49592	50412	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	49592	50412	.	+	.	insertions 12 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice5	50413	50414	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	intron	50413	52375	.	+	.	intron_id 1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice3	52374	52375	.	+	.	intron_id 0 ; splice_site "TG"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	52376	52459	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	52376	52459	.	+	.	insertions 0 ; deletions 0 ; frameshifts 5
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice5	52460	52461	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	intron	52460	52568	.	+	.	intron_id 2
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice3	52567	52568	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	52569	52643	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	52569	52643	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice5	52644	52645	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	intron	52644	52736	.	+	.	intron_id 3
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	splice3	52735	52736	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	52737	52811	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	52737	52811	.	+	.	insertions 0 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	similarity	49592	52811	1416	+	.	alignment_id 1 ; Query SPP00000123_2.0 ; Align 49592 1 378 ; Align 49982 127 429 ; Align 52377 271 18 ; Align 52400 277 60 ; Align 52569 297 75 ; Align 52737 322 75
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens) 
        Target: gi|511782587|gb|CM001946.1|:subseq(34073123,102811) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 264
   Query range: 10 -> 205
  Target range: 49585 -> 50176

    11 : SerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArgThrProThrPro :    30
         .!!|||  !!.!!.!..!.!! !!..!! !||| !!:!! !!.!!|||||| !!||| !!
         GlySerMetAsnAsnGlnAlaArgThrProAlaProSerSerAlaArgThrSerThrSer
 49586 : GGCTCCATGAATAACCAGGCGCGGACCCCAGCCCCCTCCTCGGCGCGGACCTCAACCTCA : 49643

    31 : LeuArgThrProThrProValArgThrArgThrProIleArgThrLeuThrProValLeu :    50
         :!!|||.!! !!||||||..!||||||! !||||||:!!||||||! !|||||||||! !
         ValArgAlaSerThrProThrArgThrProThrProLeuArgThrProThrProValArg
 49644 : GTCCGGGCTTCTACCCCGACCCGGACACCGACTCCACTCCGGACCCCGACTCCAGTCCGG : 49703

    51 : ThrProSerProAlaGlyThrSerProLeuValLeuThrProAlaProAlaGlnIlePro :    70
         |||! !!!!|||  ! !!|||..! !!! !||||||||||||:!!||||||!:!:!!|||
         ThrArgThrProIleArgThrGlnThrProValLeuThrProSerProAlaArgLeuPro
 49704 : ACTCGGACCCCCATCCGGACCCAGACTCCAGTCCTGACTCCGTCTCCGGCCCGGCTTCCC : 49763

    71 : ThrLeuValProThrProAlaLeuAlaArgIleProArgLeuValProProProAlaPro :    90
         .!!||||||! ! !!||||||! !|||!.!||||||! !! !|||||| !!||||||! !
         AlaLeuValGlnProProAlaProAlaHisIleProThrGlnValProThrProAlaLeu
 49764 : GCTCTGGTCCAGCCTCCCGCTCCAGCCCACATCCCCACTCAGGTCCCGACTCCCGCTCTG : 49823

    91 : AlaTrpIleProThrProValProThrProValProValArgAsnProThrProValPro :   110
         ||| !!||||||  !! !|||||| !!|||!.!! !!.! !!! !|||||||||||||||
         AlaArgIleProGlyLeuValProProProAlaArgAlaTrpIleProThrProValPro
 49824 : GCCCGGATACCCGGTCTGGTTCCGCCGCCTGCTCGGGCCTGGATCCCTACTCCGGTCCCG : 49883

   111 : ThrProAlaArgThrLeuThrPro<->ProValArgValProAla<->ProAlaProAla :   128
         ||||||||||||..!! !!.!|||   |||||||||..!||||||    !!  ! !! !!
         ThrProAlaArgValArgAsnProThrProValArgThrProAlaArgThrLeuThrPro
 49884 : ACTCCTGCTCGCGTCCGGAACCCAACTCCGGTCCGGACTCCGGCTCGGACCCTGACTCCT : 49943

   129 : GlnLeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaProAla :   148
         ! !:!!! !!.!  !  !! !||| !!  !|||! !! !! !..!  !||||||  !  !
         ProValArgValProAlaProAlaProAlaProAspProAlaGlnValLeuAlaGlyIle
 49944 : CCAGTCCGGGTCCCAGCCCCAGCCCCAGCCCCAGACCCCGCCCAGGTCCTGGCGGGGATT : 50003

   149 : LeuProLeuAspProProProGluProAlaProGluLeuProLeuLeuProGluGluAsp :   168
         ! ! !!  !  !||| !!  !!!: !!  ! !!!  ! ! !!|||! !  !!!:  !  !
         ArgThrAlaLeuProAlaLeuAspSerTyrThrAlaArgAlaLeuProLeuAspProPro
 50004 : CGGACCGCGCTCCCCGCCTTGGACTCCTACACGGCCCGGGCCCTACCTTTGGATCCGCCC : 50063

   169 : ProGluProAlaProSerLeuLysLeuIleProSerValSerSerGluAlaGlyProAla :   188
         |||||||||||||||..!! !   !!!   |||..!! !..! !!||| !!!.!|||::!
         ProGluProAlaProGluProProPheSerProGluGluAspProGluProAlaProSer
 50064 : CCGGAACCTGCTCCGGAGCCGCCTTTTTCGCCCGAGGAGGACCCTGAGCCGGCGCCGAGC : 50123

   189 : ProGlyProLeuProThrArgThrProLeuAlaAlaAsnSerProGlyPro :   205
         ! !  !! !:!!|||:!!  !:!!  !  !|||!.!  !:!!! !||||||
         LeuLysLeuIleProSerValSerSerGluAlaGlyProAlaLeuGlyPro
 50124 : CTGAAGCTCATCCCGTCGGTCTCCAGCGAGGCTGGGCCCGCCCTGGGCCCC : 50176

vulgar: SPP00000123_2.0 10 205 . gi|511782587|gb|CM001946.1|:subseq(34073123,102811) 49585 50176 + 264 M 108 324 G 0 3 M 6 18 G 0 3 M 81 243
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	gene	49586	50176	264	+	.	gene_id 2 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	49586	50176	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	49586	50176	.	+	.	insertions 6 ; deletions 0
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	similarity	49586	50176	264	+	.	alignment_id 2 ; Query SPP00000123_2.0 ; Align 49586 11 324 ; Align 49913 119 18 ; Align 49934 125 243
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00000123_2.0 # Protein # Selenoprotein V (SelV) # Human (Homo sapiens) 
        Target: gi|511782587|gb|CM001946.1|:subseq(34073123,102811) Chlorocebus sabaeus isolate 1994-021 chromosome 6, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 113
   Query range: 72 -> 232
  Target range: 49609 -> 50098

    73 : ValProThrProAlaLeuAlaArgIleProArgLeuValProProProAlaProAlaTrp :    92
         ..!|||.!!|||:!!! !||||||! ! !!! !! !|||! ! !! !!.!!|||.!! !!
         ThrProAlaProSerSerAlaArgThrSerThrSerValArgAlaSerThrProThrArg
 49610 : ACCCCAGCCCCCTCCTCGGCGCGGACCTCAACCTCAGTCCGGGCTTCTACCCCGACCCGG : 49667

    93 : IleProThrProValProThrProValProValArgAsnProThrProValProThrPro :   112
         ! !|||||||||:!!! !||||||..!|||||||||!.!! !||||||:!!! !|||! !
         ThrProThrProLeuArgThrProThrProValArgThrArgThrProIleArgThrGln
 49668 : ACACCGACTCCACTCCGGACCCCGACTCCAGTCCGGACTCGGACCCCCATCCGGACCCAG : 49727

   113 : AlaArgThrLeuThrPro<->ProValArgValProAla<-><-><-><->ProAlaPro :   127
         .!!! !..!|||||||||   |||!.!|||:!!||||||            |||||||||
         ThrProValLeuThrProSerProAlaArgLeuProAlaLeuValGlnProProAlaPro
 49728 : ACTCCAGTCCTGACTCCGTCTCCGGCCCGGCTTCCCGCTCTGGTCCAGCCTCCCGCTCCA : 49787

   128 : AlaGlnLeuLeuAlaGlyIleArgAlaAlaLeuProValLeuAspSerTyrLeuAlaPro :   147
         |||!!.:!!! !.!!  !:!!! !.!! !!  !! !!.!! !    !!  !|||!.!|||
         AlaHisIleProThrGlnValProThrProAlaLeuAlaArgIleProGlyLeuValPro
 49788 : GCCCACATCCCCACTCAGGTCCCGACTCCCGCTCTGGCCCGGATACCCGGTCTGGTTCCG : 49847

   148 : AlaLeuProLeuAspProProProGluProAlaProGluLeuProLeuLeuProGluGlu :   167
          !!! ! !!! !! !  !  !|||   |||!.!|||   ! ! !!! !:!!! !.!.  !
         ProProAlaArgAlaTrpIleProThrProValProThrProAlaArgValArgAsnPro
 49848 : CCGCCTGCTCGGGCCTGGATCCCTACTCCGGTCCCGACTCCTGCTCGCGTCCGGAACCCA : 49907

   168 : AspProGluProAlaProSerLeuLysLeuIleProSerValSerSerGluAlaGlyPro :   187
           !|||!  ! !.!!|||:!!! !!  |||! !||| !!||| !!  !  !|||   |||
         ThrProValArgThrProAlaArgThrLeuThrProProValArgValProAla---Pro
 49908 : ACTCCGGTCCGGACTCCGGCTCGGACCCTGACTCCTCCAGTCCGGGTCCCAGCC---CCA : 49964

   188 : AlaProGlyProLeuProThrArgThrProLeuAlaAlaAsnSerProGlyProThrLeu :   207
         ||||||!.!|||  !|||.!!!:!..!! !  !!.!  !...!!! !!  !|||.!!|||
         AlaProAlaProAspProAlaGlnValLeuAlaGlyIleArgThrAlaLeuProAlaLeu
 49965 : GCCCCAGCCCCAGACCCCGCCCAGGTCCTGGCGGGGATTCGGACCGCGCTCCCCGCCTTG : 50024

   208 : AspPheThrPheArgAlaAspProSerAlaIleGlyLeuAlaAspProProIleProSer :   227
         |||   :!!!:!! !|||    !!  ! !!:!:! !! ! !!     !|||  !|||..!
         Asp---SerTyrThrAlaArgAlaLeuProLeuAspProProProGluProAlaProGlu
 50025 : GAC---TCCTACACGGCCCGGGCCCTACCTTTGGATCCGCCCCCGGAACCTGCTCCGGAG : 50081

   228 : ProValProSerPro :   232
         |||  !  !||||||
         ProProPheSerPro
 50082 : CCGCCTTTTTCGCCC : 50098

vulgar: SPP00000123_2.0 72 232 . gi|511782587|gb|CM001946.1|:subseq(34073123,102811) 49609 50098 + 113 M 46 138 G 0 3 M 6 18 G 0 12 M 61 183 G 1 0 M 22 66 G 1 0 M 23 69
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	gene	49610	50098	113	+	.	gene_id 3 ; sequence SPP00000123_2.0 ; gene_orientation .
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	cds	49610	50098	.	+	.	
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	exon	49610	50098	.	+	.	insertions 15 ; deletions 2
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	exonerate:protein2genome:local	similarity	49610	50098	113	+	.	alignment_id 3 ; Query SPP00000123_2.0 ; Align 49610 73 138 ; Align 49751 119 18 ; Align 49781 125 183 ; Align 49964 187 66 ; Align 50030 210 69
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis