genewise output
Score 619.60 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000123_2.0    1 MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPV 
                     MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRT TPV 
                     MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTQTPV 
gi|511782587|gb49592 aaacgcacgcttgcatatgcgtacacacacccacacgcacacacacacg 
                     taaacgcccccccgcccctgcccccgcccctgcccctgcgcctgcacct 
                     gtcgggcacccgggcacacgttcgcgagtacgcgtacgtgcccgcgtac 


SPP00000123_2.0   50 LTPSPAGTSPLVLTPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVP 
                     LTPSPA    LV  PAPA IPT VPTPALARIP LVPPPA AWIPTPVP 
                     LTPSPARLPALVQPPAPAHIPTQVPTPALARIPGLVPPPARAWIPTPVP 
gi|511782587|gb49739 cactcgcccgcgcccgcgcacacgcacgcgcacgcgcccgcgtacacgc 
                     tcccccgtccttacccccatccatcccctcgtcgttccccgcgtccctc 
                     gtgtgcgtctgcgtctacccctgcgtctgcgactgtggttgcgcttgcg 


SPP00000123_2.0   99 TPVPVRNPTPVPTPARTLTPPVRVPAPAPA----QLLAGIRAALPVLDS 
                     TP  VRNPTPV TPARTLTPPVRVPAPAPA    Q+LAGIR ALP LDS 
                     TPARVRNPTPVRTPARTLTPPVRVPAPAPAPDPAQVLAGIRTALPALDS 
gi|511782587|gb49886 acgcgcacacgcacgcacaccgcgcgcgcgcgcgcgcggacagccgtgt 
                     cccgtgaccctgcccgctccctgtcccccccaccattcgtgcctcctac 
                     tttccgcatgcgtgtgcgttacgcacacacacccgcgggtgcgcccgcc 


SPP00000123_2.0  144 YLAPALPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPL 
                     Y A ALPLDPPPEPAPE P  PEEDPEPAPSLKLIPSVSSEAGPA GP  
                     YTARALPLDPPPEPAPEPPFSPEEDPEPAPSLKLIPSVSSEAGPALGPF 
gi|511782587|gb50033 tagcgcctgcccgcgcgccttcgggcgcgcacacactgtagggcgcgct 
                     accgctctacccacccacctccaaacacccgtattcctcgacgcctgct 
                     cgcgcatgtgcgattgggttgcggctggggcggccggcccgtgccgcct 


SPP00000123_2.0  193 PTRTPLAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSAI 
                     P  TPLAANS GPTLDFTFRADPSA GLADP IPSPVP+PILGTIPS + 
                     PAHTPLAANSSGPTLDFTFRADPSATGLADPHIPSPVPAPILGTIPSTL 
gi|511782587|gb50180 cgcaccggattgcacgtataggctgagcggccacacgcgcacgaactac 
                     ccacctccaccgcctatctgcaccccgtcacatcgctcccttgctccct 
                     ctcttgcgcacgccgccccgacggctggatcctcctccgccggccggcc 


SPP00000123_2.0  242 SLQNCTETFPSSSENFALDKRVLIRVTY                      
                     SLQN TET+ S+SENFALDKRVLIRVTY                      
                     SLQNSTETLVSTSENFALDKRVLIRVTY                      
gi|511782587|gb50327 ttcatagatgtaagatgcgaagcacgat                      
                     ctaaccacttccgaatctaagtttgtca                      
                     cagttgacgccccaccggcggcgtagcc                      


SPP00000123_2.0  270                           -CGL-XSYSLR---------YIL 
                                                 G+  S  LR         YIL 
                                -:X[tga]       LGGVPVSPPLRLHDPFSCPQYIL 
gi|511782587|gb50411 TGGTGAGGA  Intron 1   AAGAcgggcgtccccccgctttcctac 
                       <2-----[50413:52344]-2> tggtctccctgtaactcgcaatt 
                                               gaacttctcgagtccccctgcta 


SPP00000123_2.0  282 LKKSLEQQFPNHLLF                       EEDRAAQATGE 
                     LK SLEQQFPNHLLF                       EEDRAAQATGE 
                     LKNSLEQQFPNHLLF                       EEDRAAQATGE 
gi|511782587|gb52415 caaacgcctcaccctGTAAGTG  Intron 2   CAGgggaggcgagg 
                     taagtaaatcaattt<0-----[52460:52568]-0>aaagccaccga 
                     gaccgggatatcact                       ggcatcgtagg 


SPP00000123_2.0  308 FEVFVNGRLVHSKK                       RGDGFVNESRLQ 
                     FEVFVNGRLVHSKK                       RGDGFVNES LQ 
                     FEVFVNGRLVHSKK                       RGDGFVNESGLQ 
gi|511782587|gb52602 tggtgagacgctaaGTGATTC  Intron 3   CAGagggtgagtgcc 
                     tatttaggttacaa<0-----[52644:52736]-0>ggagttaacgta 
                     tggtgcgagctcgg                       gttctgcgtggg 


SPP00000123_2.0  334 KIVSVIDEEIKKR                                     
                     KIVSVI EEIKKR                                     
                     KIVSVIYEEIKKR                                     
gi|511782587|gb52773 aagagatggaaaa                                     
                     attgttaaataag                                     
                     atgccctggcgag                                     


//
Making a X in phase 2 intron
>gi|511782587|gb|CM001946.1|:subseq(34073123,102811).pep
MNNQARTPAPSSARTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTQTPVLTPSPARLPAL
VQPPAPAHIPTQVPTPALARIPGLVPPPARAWIPTPVPTPARVRNPTPVRTPARTLTPPV
RVPAPAPAPDPAQVLAGIRTALPALDSYTARALPLDPPPEPAPEPPFSPEEDPEPAPSLK
LIPSVSSEAGPALGPFPAHTPLAANSSGPTLDFTFRADPSATGLADPHIPSPVPAPILGT
IPSTLSLQNSTETLVSTSENFALDKRVLIRVTYXLGGVPVSPPLRLHDPFSCPQYILLKN
SLEQQFPNHLLFEEDRAAQATGEFEVFVNGRLVHSKKRGDGFVNESGLQKIVSVIYEEIK
KR
//
>gi|511782587|gb|CM001946.1|:subseq(34073123,102811).[49592:52811].sp
ATGAATAACCAGGCGCGGACCCCAGCCCCCTCCTCGGCGCGGACCTCAACCTCAGTCCGG
GCTTCTACCCCGACCCGGACACCGACTCCACTCCGGACCCCGACTCCAGTCCGGACTCGG
ACCCCCATCCGGACCCAGACTCCAGTCCTGACTCCGTCTCCGGCCCGGCTTCCCGCTCTG
GTCCAGCCTCCCGCTCCAGCCCACATCCCCACTCAGGTCCCGACTCCCGCTCTGGCCCGG
ATACCCGGTCTGGTTCCGCCGCCTGCTCGGGCCTGGATCCCTACTCCGGTCCCGACTCCT
GCTCGCGTCCGGAACCCAACTCCGGTCCGGACTCCGGCTCGGACCCTGACTCCTCCAGTC
CGGGTCCCAGCCCCAGCCCCAGCCCCAGACCCCGCCCAGGTCCTGGCGGGGATTCGGACC
GCGCTCCCCGCCTTGGACTCCTACACGGCCCGGGCCCTACCTTTGGATCCGCCCCCGGAA
CCTGCTCCGGAGCCGCCTTTTTCGCCCGAGGAGGACCCTGAGCCGGCGCCGAGCCTGAAG
CTCATCCCGTCGGTCTCCAGCGAGGCTGGGCCCGCCCTGGGCCCCTTTCCCGCTCACACT
CCTCTGGCCGCGAACTCATCCGGGCCCACCCTGGACTTCACCTTCAGGGCAGACCCGTCG
GCCACTGGGCTGGCAGATCCCCACATTCCCAGCCCTGTCCCCGCGCCCATCCTGGGGACC
ATCCCGTCGACCCTCTCCTTACAGAATTCTACGGAAACCTTGGTCTCCACCAGCGAAAAC
TTCGCGCTGGACAAGAGGGTCCTGATTCGAGTGACCTACTGACTGGGAGGAGTCCCTGTT
TCCCCTCCCCTGCGACTGCATGACCCCTTCTCCTGCCCTCAGTACATTCTACTGAAAAAC
AGCCTGGAGCAGCAATTTCCAAATCACCTACTCTTTGAGGAGGACAGAGCTGCCCAGGCT
ACAGGGGAGTTTGAGGTGTTTGTGAACGGGAGACTGGTCCATTCCAAGAAGAGGGGTGAT
GGCTTTGTGAACGAGTCTGGGCTGCAGAAAATTGTGAGCGTCATCTATGAGGAGATCAAG
AAAAGG
//
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	match	49592	52811	630.58	+	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	49592	50412	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	intron	50413	52344	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	52345	52459	0.00	+	1	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	intron	52460	52568	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	52569	52643	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	intron	52644	52736	0.00	+	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	52737	52811	0.00	+	0	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
//

genewise output
Score 24.77 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000123_2.0   86 PPPAPAWIP                          PVPTP-VPVRNPTP 
                     PPPAP W+                            V  P  P+ +P P 
                     PPPAPTWVG          T:G[ggg]        SVSAPNTPILSPCP 
gi|511782587|g-16600 cccgcatggGGTGGGGT  Intron 1   CAGGGtgtgcaacattctc 
                     ccccccgtg <1-----[16572:12463]-1>  ctcccaccttccgc 
                     ttgacggga                          cgaacccccattcc 


SPP00000123_2.0  109 VPTP                                              
                     +P P                                              
                     LPLP                                              
gi|511782587|g-12418 cctc                                              
                     tctc                                              
                     gcat                                              


//
Making a G in phase 1 intron
>gi|511782587|gb|CM001946.1|:subseq(34073123,102811).pep
PPPAPTWVGGSVSAPNTPILSPCPLPLP
//
>gi|511782587|gb|CM001946.1|:subseq(34073123,102811).[16600:12405].sp
CCTCCTCCGGCACCCACGTGGGTGGGAGGGTCCGTGTCAGCACCCAACACCCCCATCTTA
TCTCCTTGCCCCCTGCCCTTACCT
//
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	match	16600	12407	24.77	-	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	16600	16573	0.00	-	0	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	intron	16572	12463	0.00	-	.	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
gi|511782587|gb|CM001946.1|:subseq(34073123,102811)	GeneWise	cds	12462	12407	0.00	-	2	gi|511782587|gb|CM001946.1|:subseq(34073123,102811)-genewise-prediction-1
//