Output_id:  SelU.11.cysteine
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782573|gb|CM001961.1|
-Program        exonerate
-Query name     gi|164664450|ref|NP_001106912.1| prostamide/PG F synthase [Sus scrofa] gi|163930857|dbj|BAF96021.1| prostamide/PG F synthase [Sus scrofa]
-Query range    1-202      length:202   coverage: 1.0
-Profile range  1-585      length:585   coverage: 1.0    sec_position: [286]
-ASI:           0.2367     (ignoring gaps: 0.3274)
-AWSIc:         0.5011     Z-score: 0.707
-AWSIw:         0.5444     Z-score: 0.553
-State          kept

------- alignment -------
Query   MSTVDLARVGACVLKHAVTGE <---Intron---> AVELRSLWQEQACVVAGLRRFGUMVCRWIARDLSSLKGLLDQHGVRLVGVGPEALGLQEFLDG
        ||||||||||||/|||||||| <   141nt    > ||||||||///||||||||||| /||||||/||| | ||||||||||||||||||||||||||
Target  MSTVDLARVGACILKHAVTGE                AVELRSLWRDRACVVAGLRRFGCVVCRWIAQDLSGLAGLLDQHGVRLVGVGPEALGLQEFLDG
        aaaggcgcgggtacacggagg                gggccactcgcgtggggccctgtggtctagcgcagcggccgccggccggggcggcgccgtcgg
        tgctatcgtgcgttaactcga   gt     ag    ctatggtggagcgttcgtggtggttgggtcaatggtcgttaaagtgttgtgcactgtaattag
        gcggctccgcgccggtggtgg                cggggcgggtcgcggcgggccccggccgccgcccccggcgcgctgtggcggcgcgtgggcgcc
                                                                   *                                        

Query   GYFAGD <---Intron---> LYLDESKQFYKELGFKR <---Intron---> YSSLSILPAALGKPVRDVAAK <---Intron---> AKAAGIQG
        |||||/ <   443nt    > |||||||| |||||||/ <   596nt    > |/|||/||||||||||||||| <    96nt    > ||| ||||
Target  GYFAGE                LYLDESKQLYKELGFKQ                YNSLSVLPAALGKPVRDVAAK                AKAVGIQG
        gttggg                ctcggaacctagcgtac                taacagccggcgacgcgggga                gagggacg
        gatcg    gt     ag   atataagaataaatgtaa   gt     ag    aagtgttccctgactgatcca   gt     ag    cactgtag
        cccga                gccgtgcggttgggccg                gcccgccccatgggtgttgtcg                cgttccgg
                                                                                                            

Query   NLSGDLLQSGGLLVVAKG <---Intron---> GDKVLLHFVQKSPGDYAPQESILQALCISAEAACTHQPP <---Intron---> QCDEEACSR-
        |||||||||||||||/|| <   296nt    > |||||||||||||||| ||| ||| | ||||   // |  <  101037nt  >    |||| | 
Target  NLSGDLLQSGGLLVVSKG                GDKVLLHFVQKSPGDYVPQEHILQVLGISAEVCASNPPQ                MLGEEACGRG
        actggcccaggccggaag                ggagccctgcatcggtgccgcaccgcgatgggtgaaccc                atggggtgag
        atcgattagggttttga    gt     ag   ggaatttattaaccgaatcaaattattgtccatgcgacca   gt     ac    ttgaacgggg
        cgtgcgggcaggggcca                ttcagggtctggcacttccggccggcgcctggctcccgtg                ggggattgga
                                                                                                           
------- positions -------
Exon 1    128967462    128967524
Exon 2    128967116    128967320
Exon 3    128966621    128966672
Exon 4    128965961    128966024
Exon 5    128965789    128965864
Exon 6    128965374    128965492
Exon 7    128864307    128864336

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *