genewise output
Score 406.23 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000116_2.0    6 GSRSEEPGAGNRESG--SREPGLAAAAMSTVDLARVGACILKHAVTGE  
                     GS S+EPG+GN+E G  S EPG AAAAMSTVDLARVGACILKHAVTGE  
                     GSGSQEPGSGNQEPGAASWEPGRAAAAMSTVDLARVGACILKHAVTGE  
gi|511782573|-102231 gtgacgcgtgacgcgggatgcgcggggaaaggcgcgggtacacggagg  
                     gcggaacgcgaaacgccggacggcccctgctatcgtgcgttaactcga  
                     atgcgggatgcgggaggcgaagggcgcgcggctccgcgccggtggtgg  


SPP00000116_2.0   52                        AVELRSLWREHACVVAGLRRFGCVVC 
                                            AVELRSLWR+ ACVVAGLRRFGCVVC 
                                            AVELRSLWRDRACVVAGLRRFGCVVC 
gi|511782573|-102087 GTGAGAC  Intron 1   CAGgggccactcgcgtggggccctgtggt 
                     <0-----[102087:10194-0>ctatggtggagcgttcgtggtggttg 
                                            cggggcgggtcgcggcgggccccggc 


SPP00000116_2.0   78 RWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGDYFAG        
                     RWIAQDLS LAGLLDQHGVRLVGVGPEALGLQEFLDG YFAG        
                     RWIAQDLSGLAGLLDQHGVRLVGVGPEALGLQEFLDGGYFAG        
gi|511782573|-101868 ctagcgcagcggccgccggccggggcggcgccgtcgggttgg        
                     ggtcaatggtcgttaaagtgttgtgcactgtaattaggatcg        
                     cgccgcccccggcgcgctgtggcggcgcgtgggcgcccccga        


SPP00000116_2.0  120                           LYLDESKQLYKELGFK        
                                               LYLDESKQLYKELGFK        
                               E:E[gag]        LYLDESKQLYKELGFK        
gi|511782573|-101742 GGTGCGTC  Intron 2   CAGAGctcggaacctagcgta        
                      <1-----[101741:10129-1>  tataagaataaatgta        
                                               ccgtgcggttgggccg        


SPP00000116_2.0  137                           YNSLSILPAALGKPVRDVAAK   
                                               YNSLS+LPAALGKPVRDVAAK   
                                R:Q[cag]       YNSLSVLPAALGKPVRDVAAK   
gi|511782573|-101248 CAGTGAGTG  Intron 3   CAGGtaacagccggcgacgcgggga   
                       <2-----[101246:10065-2> aagtgttccctgactgatcca   
                                               cccgccccatgggtgttgtcg   


SPP00000116_2.0  159                        AKAVGIQGNLSGDLLQSGGLLVVSK  
                                            AKAVGIQGNLSGDLLQSGGLLVVSK  
                                            AKAVGIQGNLSGDLLQSGGLLVVSK  
gi|511782573|-100586 GTTTGTG  Intron 4   CAGgagggacgactggcccaggccggaa  
                     <0-----[100586:10049-0>cactgtagatcgattagggttttga  
                                            cgttccggcgtgcgggcaggggcca  


SPP00000116_2.0  184                           GDKVLLHFVQKSPGDYVPKEHIL 
                                               GDKVLLHFVQKSPGDYVP+EHIL 
                               G:G[ggt]        GDKVLLHFVQKSPGDYVPQEHIL 
gi|511782573|-100415 GGTGGGTT  Intron 5   CAGGTggagccctgcatcggtgccgcac 
                      <1-----[100414:10011-1>  gaatttattaaccgaatcaaatt 
                                               tcagggtctggcacttccggccg 


SPP00000116_2.0  208 QVLGISAEVCASDPPQ                                  
                     QVLGISAEVCAS+PPQ                                  
                     QVLGISAEVCASNPPQ                                  
gi|511782573|-100047 cgcgatgggtgaaccc                                  
                     attgtccatgcgacca                                  
                     gcgcctggctcccgtg                                  


//
Making a E in phase 1 intron
Making a Q in phase 2 intron
Making a G in phase 1 intron
>gi|511782573|gb|CM001961.1|:subseq(128865374,202231).pep
GSGSQEPGSGNQEPGAASWEPGRAAAAMSTVDLARVGACILKHAVTGEAVELRSLWRDRA
CVVAGLRRFGCVVCRWIAQDLSGLAGLLDQHGVRLVGVGPEALGLQEFLDGGYFAGELYL
DESKQLYKELGFKQYNSLSVLPAALGKPVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVSK
GGDKVLLHFVQKSPGDYVPQEHILQVLGISAEVCASNPPQ
//
>gi|511782573|gb|CM001961.1|:subseq(128865374,202231).[102231:99998].sp
GGATCTGGGAGCCAGGAGCCGGGATCTGGGAACCAGGAGCCGGGAGCGGCGAGCTGGGAA
CCAGGGCGGGCGGCCGCGGCCATGAGCACGGTGGACCTTGCCCGCGTGGGCGCGTGCATC
CTGAAGCATGCGGTGACTGGGGAGGCCGTGGAGCTGCGGAGCCTGTGGCGGGATCGCGCG
TGCGTGGTGGCCGGGCTGCGGCGCTTCGGCTGCGTGGTGTGCCGCTGGATCGCCCAGGAC
CTCAGCGGCCTCGCGGGGCTCCTGGACCAGCACGGTGTGCGTCTGGTGGGCGTGGGGCCC
GAGGCCCTGGGTCTGCAGGAGTTCCTGGACGGCGGCTACTTCGCGGGAGAGCTCTACCTG
GATGAGAGCAAGCAGCTTTATAAGGAGCTGGGCTTCAAGCAGTACAACAGCCTGAGCGTC
CTCCCCGCAGCTCTGGGGAAGCCTGTGCGTGATGTGGCTGCCAAGGCCAAGGCTGTTGGC
ATCCAGGGGAACCTGTCTGGGGACCTGCTGCAGAGCGGAGGGCTGCTGGTGGTCAGCAAA
GGTGGTGACAAAGTGCTGCTGCATTTCGTTCAGAAGTCCCCAGGCGATTATGTCCCCCAG
GAGCACATCCTGCAGGTCCTGGGCATCTCTGCGGAGGTCTGTGCCAGCAACCCGCCTCAG
//
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	match	102231	100000	407.23	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	102231	102088	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	intron	102087	101947	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	101946	101742	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	intron	101741	101299	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	101298	101247	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	intron	101246	100651	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	100650	100587	0.00	-	1	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	intron	100586	100491	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	100490	100415	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	intron	100414	100119	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(128865374,202231)	GeneWise	cds	100118	100000	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(128865374,202231)-genewise-prediction-1
//