Output_id:  SelU.20.cysteine
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782581|gb|CM001953.1|
-Program        genewise
-Query name     gi|73946376|ref|XP_848380.1| PREDICTED: similar to UPF0308 protein C9orf21 [Canis familiaris]
-Query range    7-230      length:230   coverage: 0.97
-Profile range  8-585      length:585   coverage: 0.99    sec_position: [286]
-ASI:           0.1916     (ignoring gaps: 0.2645)
-AWSIc:         0.388     Z-score: -0.039
-AWSIw:         0.4097     Z-score: -0.844
-State          kept

------- alignment -------
Query   --APGPVTQQVSGRAVPAAAPSGPERGQPLSAAVAELPVLDASGRRVPFGALFRERRAVVVFVR <---Intron---> HFLUYICKEYVEDLAKIPKS
          || |||/||||   |  |||||/|||||/||||||||||| |/||||||||||||||||||| <   309nt    > ||| ||||||||||||||||
Target  MAAPAPVTRQVSGGTAPVPAPSGPDRGQPLAAAVAELPVLDARGQRVPFGALFRERRAVVVFVR                HFLCYICKEYVEDLAKIPKS
        aggcgcgaccgaggagcgcgcagcgcgcccggggggccgcggcgccgctggctcgccggggtgc                ctcttatagtgggcgaacaa
        tccccctcgatgggccctcccggcaggactccctcatcttacggagtctgcttgaggctttttg   gt     ag    attgatgaaataatcatcag
        gcgccgcgggtcccccgcgcgcccctggcgaccgcgggggcccgggatccggcggcccgggcgg                ttgtcccgacagtgcacggt
                                                                                           *                

Query   VLQ <---Intron---> EADITLIVIGQSSYHHIE <---Intron---> PFCKLTGYSHEIYVDPEREIYKKLGMKRGEGIASSG <---Intron
         || <   2832nt   > |||/|||||||||||||| <   163nt    > |||/||||||||||||||||||/||||||| ||||| <   4830nt
Target  FLQ                EADVTLIVIGQSSYHHIE                PFCRLTGYSHEIYVDPEREIYKRLGMKRGEEIASSG           
        ttc                ggggacagagctttccag                cttacagttcgatggcgagataatgaacgggagttg           
        tta   gt     ag    acatcttttgaccaaata   gt     ag    ctggtcgacaatatacagataagtgtaggaatccc    gt     a
        caa                aatcctagtagacctttg                ttcagtatttactcttgaattaagagaataatcca            
                                                                                                            

Query   ---> KSPHIKSNILSGSIRSLCRAVTGPLFDFQGDPAQQGGTLILGPG <---Intron---> NNIHFIHRDRNRLDHKPINSVLQLVGIQHVDFTSR
           > /|||/|||/||||//|| ||||||||||||||||||| |||||| <   3993nt   > ||||||||||||||||||||||||||/|||/||/|
Target       QSPHVKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGILILGPG                NNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNR
             caccgatacctgaccactcggagcctgtcggcgccggacatgcg                aaactaccgaaatgcacaatgtccgggccgataaa
        g   gagcatacattcggtagtggctcgcttatagaccaaggttttgc    gt     ag   gaatattagagagtaaactacttattgtaatatcag
            agcccaaatacaactgcgggagccgctttaacatgatacctata                tcccttacctgtggtcatccttagtcatgtgctaca
                                                                                                            

Query   PSIIHV
        ||/|||
Target  PSVIHV
        ctgacg
        ccttat
        tatctg
              
------- positions -------
Exon 1    106486811    106487002
Exon 2    106487312    106487380
Exon 3    106490213    106490266
Exon 4    106490430    106490535
Exon 5    106495366    106495497
Exon 6    106499491    106499615

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *