genewise output
Score 447.83 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000114_2.0    1 MAAPAPVTRQVSGAAALVPAPSGPDSGQPLAAAVAELPVLDARGQRVPF 
                     MAAPAPVTRQVSG  A VPAPSGPD GQPLAAAVAELPVLDARGQRVPF 
                     MAAPAPVTRQVSGGTAPVPAPSGPDRGQPLAAAVAELPVLDARGQRVPF 
gi|511782581|g100000 aggcgcgaccgaggagcgcgcagcgcgcccggggggccgcggcgccgct 
                     tccccctcgatgggccctcccggcaggactccctcatcttacggagtct 
                     gcgccgcgggtcccccgcgcgcccctggcgaccgcgggggcccgggatc 


SPP00000114_2.0   50 GALFRERRAVVVFVR                       HFLCYICKEYV 
                     GALFRERRAVVVFVR                       HFLCYICKEYV 
                     GALFRERRAVVVFVR                       HFLCYICKEYV 
gi|511782581|g100147 ggctcgccggggtgcGTGAGCG  Intron 1   CAGctcttatagtg 
                     gcttgaggctttttg<0-----[100192:10050-0>attgatgaaat 
                     cggcggcccgggcgg                       ttgtcccgaca 


SPP00000114_2.0   76 EDLAKIPRSFLQ                       EANVTLIVIGQSSY 
                     EDLAKIP+SFLQ                       EA+VTLIVIGQSSY 
                     EDLAKIPKSFLQ                       EADVTLIVIGQSSY 
gi|511782581|g100534 ggcgaacaattcGTGAGTT  Intron 2   AAGggggacagagcttt 
                     aatcatcagtta<0-----[100570:10340-0>acatcttttgacca 
                     gtgcacggtcaa                       aatcctagtagacc 


SPP00000114_2.0  102 HHIE                       PFCKLTGYSHEIYVDPEREIYK 
                     HHIE                       PFC+LTGYSHEIYVDPEREIYK 
                     HHIE                       PFCRLTGYSHEIYVDPEREIYK 
gi|511782581|g103444 ccagGTAAATA  Intron 3   CAGcttacagttcgatggcgagata 
                     aata<0-----[103456:10361-0>ctggtcgacaatatacagataa 
                     tttg                       ttcagtatttactcttgaatta 


SPP00000114_2.0  128 RLGMKRGEEIASS                          QSPHIKSNLL 
                     RLGMKRGEEIASS                          QSPH+KSNLL 
                     RLGMKRGEEIASS          G:G[gga]        QSPHVKSNLL 
gi|511782581|g103685 atgaacgggagttGGTAAGAC  Intron 4   CAGGAcaccgatacc 
                     gtgtaggaatccc <1-----[103725:10855-1>  agcatacatt 
                     agagaataatcca                          gcccaaatac 


SPP00000114_2.0  152 SGSLQSLWRAVTGPLFDFQGDPAQQGGTLILGP                 
                     SGSLQSLWRAVTGPLFDFQGDPAQQGG LILGP                 
                     SGSLQSLWRAVTGPLFDFQGDPAQQGGILILGP                 
gi|511782581|g108587 tgaccactcggagcctgtcggcgccggacatgc                 
                     cggtagtggctcgcttatagaccaaggttttgc                 
                     aactgcgggagccgctttaacatgatacctata                 


SPP00000114_2.0  185                           NNIHFIHRDRNRLDHKPINSVLQ 
                                               NNIHFIHRDRNRLDHKPINSVLQ 
                               G:G[ggt]        NNIHFIHRDRNRLDHKPINSVLQ 
gi|511782581|g108686 GGTAAGCA  Intron 5   TAGGTaaactaccgaaatgcacaatgtc 
                      <1-----[108687:11267-1>  aatattagagagtaaactactta 
                                               cccttacctgtggtcatccttag 


SPP00000114_2.0  209 LVGVQHVNFTNRPSVIHV                                
                     LVGVQHVNFTNRPSVIHV                                
                     LVGVQHVNFTNRPSVIHV                                
gi|511782581|g112751 cgggccgataaactgacg                                
                     ttgtaatatcagccttat                                
                     tcatgtgctacatatctg                                


//
Making a G in phase 1 intron
Making a G in phase 1 intron
>gi|511782581|gb|CM001953.1|:subseq(106386811,212804).pep
MAAPAPVTRQVSGGTAPVPAPSGPDRGQPLAAAVAELPVLDARGQRVPFGALFRERRAVV
VFVRHFLCYICKEYVEDLAKIPKSFLQEADVTLIVIGQSSYHHIEPFCRLTGYSHEIYVD
PEREIYKRLGMKRGEEIASSGQSPHVKSNLLSGSLQSLWRAVTGPLFDFQGDPAQQGGIL
ILGPGNNIHFIHRDRNRLDHKPINSVLQLVGVQHVNFTNRPSVIHV
//
>gi|511782581|gb|CM001953.1|:subseq(106386811,212804).[100000:112804].sp
ATGGCCGCGCCCGCCCCGGTCACGCGGCAGGTTAGCGGCGGCACCGCCCCGGTCCCGGCC
CCGAGCGGCCCCGACCGTGGGCAGCCCCTGGCAGCCGCCGTGGCCGAGCTGCCGGTGCTG
GACGCCCGCGGGCAGCGGGTACCTTTCGGCGCGCTGTTCCGGGAGCGCCGCGCCGTGGTG
GTGTTCGTGCGGCATTTTCTGTGTTACATCTGCAAGGAATACGTAGAGGATCTGGCCAAA
ATCCCGAAGAGTTTCTTACAAGAAGCAGATGTCACCCTTATAGTGATTGGACAGTCATCC
TACCATCATATTGAGCCTTTTTGCAGACTGACTGGATATTCTCATGAAATCTATGTCGAT
CCTGAGAGAGAAATTTATAAAAGATTGGGAATGAAACGAGGTGAAGAAATTGCCTCCTCA
GGACAGAGCCCCCACGTAAAATCAAATCTACTCTCAGGAAGCCTTCAGAGCCTGTGGCGG
GCAGTGACCGGCCCGCTCTTTGATTTTCAAGGAGACCCAGCTCAGCAAGGTGGAATCCTC
ATTTTAGGTCCAGGTAACAACATCCATTTTATACACCGCGATAGGAATAGGTTGGATCAC
AAACCTATCAACTCTGTTTTACAGCTTGTCGGAGTTCAGCATGTGAACTTTACAAACAGA
CCTTCAGTTATCCATGTG
//
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	match	100000	112804	447.83	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	100000	100191	0.00	+	0	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	intron	100192	100500	0.00	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	100501	100569	0.00	+	0	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	intron	100570	103401	0.00	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	103402	103455	0.00	+	0	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	intron	103456	103618	0.00	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	103619	103724	0.00	+	0	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	intron	103725	108554	0.00	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	108555	108686	0.00	+	2	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	intron	108687	112679	0.00	+	.	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
gi|511782581|gb|CM001953.1|:subseq(106386811,212804)	GeneWise	cds	112680	112804	0.00	+	2	gi|511782581|gb|CM001953.1|:subseq(106386811,212804)-genewise-prediction-1
//