Command line: [exonerate -m p2g --showtargetgff -q SelU1.U_to_X -t gi|511782582|gb|CM001952.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000109_2.0 # Protein # Selenoprotein U1 (SelU1) # Human (Homo sapiens) 
        Target: gi|511782582|gb|CM001952.1|:subseq(73595939,200569) Chlorocebus sabaeus isolate 1994-021 chromosome 11, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 599
   Query range: 3 -> 229
  Target range: 100663 -> 99999

      4 : LeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyAlaGlyAlaLeuG :     23
          |||:!!||||||!!!! !|||:!!:!!||||||||||||!  ||||||||||||||||
          LeuGluAspProArgCysPheSerValGlyMetTrpSerThrGlyAlaGlyAlaLeuG
 100663 : CTTGAGGACCCAAGGTGCTTCTCTGTGGGGATGTGGTCCACGGGTGCAGGAGCCCTTG : 100606

     24 : ly-AlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLeuSerLysProG :     42
          ||#||||||||||||||||||||||||!.!!!.! !||||||||||||||||||||| 
          ly#AlaAlaAlaLeuAlaLeuLeuLeuValLysArgAspValPheLeuSerLysProT
 100605 : GAGGCTGCTGCCTTGGCACTGCTGCTGGTCAAGAGAGATGTATTTTTGTCTAAGCCCT : 100548

     43 : lnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeuGluLysGluPr :     61
           !|||! !!.!|||||||||||||||:!!|||||||||||||||||||||||| !!||
          rpLysGluValLeuGluTyrLeuGluAsnIleAspLeuLysThrLeuGluLys***Pr
 100547 : GGAAAGAGGTGCTGGAGTACCTGGAGAATATAGACCTGAAAACACTAGAGAAGTAACC : 100491

     62 : oArgThrPheLysAlaLysGluLeuTrpGlu--LysAsnGlyAlaValIleMetAlaV :     80
          |! !||||||||||||||||||||||||:!!##!!.||||||!.!||||||:!!||||
          oMetThrPheLysAlaLysGluLeuTrpGln##AsnAsnGlyValValIleValAlaV
 100490 : AATGACTTTCAAAGCAAAGGAGCTATGGCAGGGAACAATGGAGTTGTGATTGTGGCTG : 100432

     81 : alArgArgProGlyCysPheLeuCysArgGluGluAlaAlaAspLeuSerSerLeuLy :     99
          ||      |||||||||||||||!! !:!|||! !|||||||||||||||||||||  
          al------ProGlyCysPheLeuTrpGlnGluGlyAlaAlaAspLeuSerSerLeu--
 100431 : TG------CCAGGCTGTTTTCTCTGGCAAGAGGGGGCTGCAGACCTGTCATCCCTC-- : 100381

    100 : sSer--MetLeuAspGlnLeuGlyValProLeuTyrAlaValValLysGluHisIleA :    118
           !:!##! !:!!|||.!.|||||||||||||||||||||||||||!!. !!!!.||||
          -Asn##LysValAspAspLeuGlyValProLeuTyrAlaValValAsn***GlnIleA
 100380 : -AACCCAAGGTGGACGATCTGGGTGTCCCCCTCTATGCAGTTGTTAATTAGCAGATCA : 100325

    119 : rgThrGluValLysAspPheGlnProTyrPheLysGlyGluIlePheLeuAspGluLy :    137
          |||||!!::!!|||  !|||||| !!! !|||||| !!||||||.!!||||||!!:!!
          rgThrAspIleLysPhePheGlnThrCysPheLysArgGluIleLeuLeuAspAspAs
 100324 : GGACTGACATAAAGTTTTTCCAAACTTGTTTCAAAAGAGAAATCCTCCTGGATGATAA : 100268

    138 : sLysLysPheTyrGlyProGlnArgArg--LysMetMetPheMetGlyPheIleArgL :    156
          .|||||||||||||||! !||||||!:!##|||||||||||||||||||||! !! !|
          nLysLysPheTyrGlyLeuGlnArgGln##LysMetMetPheMetGlyPheSerProL
 100267 : TAAAAAGTTCTATGGTCTACAAAGACAGAAAAGATGATGTTTATGGGATTTAGCCCTC : 100209

    157 : euGlyValTrpTyrAsnPhePheArgAlaTrpAsnGlyGlyPheSerGlyAsnLeuGl :    175
          |||||:!!|||         .!!! !||||||||| !!|||||| !!|||||||||||
          euGlyMetTrp---------LeuProAlaTrpAsnArgGlyPheProGlyAsnLeuGl
 100208 : TGGGAATGTGG---------CTTCCAGCCTGGAATCGAGGCTTCCCTGGAAACCTGGA : 100161

    176 : uGlyGluGlyPheIleLeuGlyGlyValPheValValGlySerGlyLysGlnGlyIle :    194
          |  !:!!|||||||||||| !!||||||||||||||||||||||||||||||||||||
          uThrGlnGlyPheIleLeuArgGlyValPheValValGlySerGlyLysGlnGlyIle
 100160 : AACCCAAGGCTTCATCCTCAGGGGAGTTTTTGTGGTGGGATCAGGAAAGCAGGGAATT : 100104

    195 : LeuLeuGluHisArgGluLysGluPheGlyAspLysValAsnLeuLeuSerValLeuG :    214
             ! !:!!||| !!|||||||||!:!|||||||||||||||! !|||||||||||||
          ---ProLysHisGlyGluLysGluTyrGlyAspLysValAsnSerLeuSerValLeuG
 100103 : ---CCCAAGCATGGAGAAAAAGAATATGGAGACAAAGTAAACTCACTTTCTGTTCTGG : 100047

    215 : luAlaAlaLysMetIleLysProGlnThrLeuAlaSerGluLysLys :    229
          ||||||||!:!! !|||||||||:!!|||||||||||||||||||||
          luAlaAlaArgLysIleLysProGluThrLeuAlaSerGluLysLys
 100046 : AAGCTGCTAGGAAGATCAAACCAGAGACTTTGGCCTCAGAGAAAAAA : 100000

vulgar: SPP00000109_2.0 3 229 . gi|511782582|gb|CM001952.1|:subseq(73595939,200569) 100663 99999 - 599 M 20 60 F 0 1 M 48 144 F 0 2 M 9 27 G 2 0 M 16 48 G 1 0 M 1 3 F 0 2 M 46 138 F 0 2 M 13 39 G 3 0 M 32 96 G 1 0 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782582|gb|CM001952.1|:subseq(73595939,200569)	exonerate:protein2genome:local	gene	100000	100663	599	-	.	gene_id 1 ; sequence SPP00000109_2.0 ; gene_orientation .
gi|511782582|gb|CM001952.1|:subseq(73595939,200569)	exonerate:protein2genome:local	cds	100000	100663	.	-	.	
gi|511782582|gb|CM001952.1|:subseq(73595939,200569)	exonerate:protein2genome:local	exon	100000	100663	.	-	.	insertions 0 ; deletions 7 ; frameshifts 7
gi|511782582|gb|CM001952.1|:subseq(73595939,200569)	exonerate:protein2genome:local	similarity	100000	100663	599	-	.	alignment_id 1 ; Query SPP00000109_2.0 ; Align 100664 4 60 ; Align 100603 24 144 ; Align 100457 72 27 ; Align 100430 83 48 ; Align 100382 100 3 ; Align 100377 101 138 ; Align 100237 147 39 ; Align 100198 163 96 ; Align 100102 196 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis