Command line: [exonerate -m p2g --showtargetgff -q SelU_1.fa.U_to_X -t gi|511782585|gb|CM001948.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001362_2.0 # Protein # Selenoprotein U1 (SelU1) # Macaque (Macaca mulatta) 
        Target: gi|511782585|gb|CM001948.1|:subseq(68786748,200685) Chlorocebus sabaeus isolate 1994-021 chromosome 8, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 607
   Query range: 73 -> 223
  Target range: 100449 -> 99999

     74 : AsnGlyAlaValIleMetAlaValArgArgProGlyCysPheLeuCysArgGluGluA :     93
          ||| !!|||:!!|||||||||! !||||||||||||||||||||| !! !!|||||||
          AsnArgAlaMetIleMetAlaGlyArgArgProGlyCysPheLeuArg***GluGluA
 100449 : AATAGAGCTATGATTATGGCTGGGCGGAGGCCAGGCTGTTTCCTCCGTTGAGAGGAAG : 100392

     94 : laAlaAspLeuSerSerLeuLysSerMetLeuAspGlnLeuGlyValProLeuTyrAl :    112
          ||||||||||||||||||||||| !!|||||||||:!!|||||||||||||||!:!||
          laAlaAspLeuSerSerLeuLysProMetLeuAspGluLeuGlyValProLeuPheAl
 100391 : CTGCGGATCTGTCCTCCCTGAAACCCATGTTGGACGAGCTGGGAGTCCCCCTCTTTGC : 100335

    113 : aValValLysGluHisIleArgThrGluValGluAspPheGlnProTyrPheLysGly :    131
          |! !|||||||||||||||||||||||||||:!!||||||||||||||||||||||||
          aGlyValLysGluHisIleArgThrGluValLysAspPheGlnProTyrPheLysGly
 100334 : AGGGGTAAAGGAGCACATCAGGACTGAAGTGAAGGATTTCCAGCCTTATTTCAAAGGA : 100278

    132 : GluIlePheLeuAspGluLysLysLysPheTyrGlyProGlnArgArgLysMetMetP :    151
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluIlePheLeuAspGluLysLysLysPheTyrGlyProGlnArgArgLysMetMetP
 100277 : GAAATCTTCCTGGATGAAAAGAAAAAGTTCTATGGTCCACAAAGGCGGAAGATGATGT : 100218

    152 : heMetGlyPheIleArgLeuGlyValTrpTyrAsnPhePheArgAlaTrpAsnGlyGl :    170
          |||||||||||:!!!.!|||||||||||||||   |||||| !!||||||||||||||
          heMetGlyPheLeuHisLeuGlyValTrpTyr---PhePhe***AlaTrpAsnGlyGl
 100217 : TTATGGGATTTCTCCATCTGGGAGTGTGGTAC---TTCTTCTGAGCCTGGAATGGAGG : 100164

    171 : yPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuGlyGlyValPheValValGly :    189
          ||||||||||||||||||||||||||||||||||||| !!! !|||||||||||||||
          yPheSerGlyAsnLeuGluGlyGluGlyPheIleLeuArgAspValPheValValGly
 100163 : CTTCTCTGGAAACCTGGAAGGAGAAGGCTTCATCCTCAGGGACGTTTTCGTGGTAGGA : 100107

    190 : SerGlyLysGlnGlyIleLeuLeuGluHisArgGluLysGluPheGlyAspLysValA :    209
          ||||||!!.:!!|||||||||||||||||| !!|||||| !!||||||||||||||||
          SerGlyAsnGluGlyIleLeuLeuGluHis***GluLys***PheGlyAspLysValA
 100106 : TCAGGAAACGAGGGGATTCTTCTCGAGCACTGAGAAAAATAATTTGGAGACAAAGTAA : 100047

    210 : snLeuLeuSer<->ValLeuGluAlaAlaLysMetIleLysProGln :    223
          |||||!!!!!!   |||! !|||||||||:!!|||||||||||||||
          snLeuPheCysLeuValTrpGluAlaAlaGluMetIleLysProGln
 100046 : ATCTGTTTTGTCTGGTTTGGGAAGCTGCTGAGATGATCAAACCACAG : 100000

vulgar: SPP00001362_2.0 73 223 . gi|511782585|gb|CM001948.1|:subseq(68786748,200685) 100449 99999 - 607 M 88 264 G 1 0 M 50 150 G 0 3 M 11 33
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	gene	100000	100449	607	-	.	gene_id 1 ; sequence SPP00001362_2.0 ; gene_orientation .
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	cds	100000	100449	.	-	.	
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	exon	100000	100449	.	-	.	insertions 3 ; deletions 1
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	similarity	100000	100449	607	-	.	alignment_id 1 ; Query SPP00001362_2.0 ; Align 100450 74 264 ; Align 100186 163 150 ; Align 100033 213 33
# --- END OF GFF DUMP ---
#

C4 Alignment:
------------
         Query: SPP00001362_2.0 # Protein # Selenoprotein U1 (SelU1) # Macaque (Macaca mulatta) 
        Target: gi|511782585|gb|CM001948.1|:subseq(68786748,200685) Chlorocebus sabaeus isolate 1994-021 chromosome 8, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 316
   Query range: 0 -> 70
  Target range: 100685 -> 100475

      1 : GluMetSerPheLeuGlnAspProSerPhePheThrMetGlyMetTrpSerIleGlyA :     20
          ||||||||||||||||||||||||||||||||||||:!!|||||||||||||||||||
          GluMetSerPheLeuGlnAspProSerPhePheThrValGlyMetTrpSerIleGlyA
 100685 : GAAATGTCTTTCCTCCAGGACCCAAGTTTCTTCACTGTGGGCATGTGGTCCATTGGTG : 100628

     21 : laGlyAlaLeuGlyAlaAlaAlaLeuAlaLeuLeuLeuAlaAsnThrAspValPheLe :     39
          ||||||||! !||||||.!!||||||||||||||||||||||||||||||:!!|||||
          laGlyAlaProGlyAlaThrAlaLeuAlaLeuLeuLeuAlaAsnThrAspMetPheLe
 100627 : CAGGAGCTCCGGGGGCCACTGCCTTGGCATTGCTGCTGGCCAACACAGACATGTTTCT : 100571

     40 : uSerLysProGlnLysAlaAlaLeuGluTyrLeuGluAspIleAspLeuLysThrLeu :     58
          ||||||| !!|||||||||.!!||||||||||||||||||:!!|||||||||||||||
          uSerLysSerGlnLysAlaThrLeuGluTyrLeuGluAspValAspLeuLysThrLeu
 100570 : GTCTAAGTCCCAGAAAGCGACACTGGAGTACCTGGAGGATGTAGACCTGAAAACTCTG : 100514

     59 : GluLysGluProArgThrLeuLysAlaLysGluLeu :     70
          ||||||||||||||||||||||||||||||||||||
          GluLysGluProArgThrLeuLysAlaLysGluLeu
 100513 : GAGAAGGAACCAAGGACTTTGAAAGCAAAGGAGCTA : 100476

vulgar: SPP00001362_2.0 0 70 . gi|511782585|gb|CM001948.1|:subseq(68786748,200685) 100685 100475 - 316 M 70 210
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	gene	100476	100685	316	-	.	gene_id 2 ; sequence SPP00001362_2.0 ; gene_orientation .
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	cds	100476	100685	.	-	.	
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	exon	100476	100685	.	-	.	insertions 0 ; deletions 0
gi|511782585|gb|CM001948.1|:subseq(68786748,200685)	exonerate:protein2genome:local	similarity	100476	100685	316	-	.	alignment_id 2 ; Query SPP00001362_2.0 ; Align 100686 1 210
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis