genewise output
Score 371.11 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00001359_2.0    1 LVAASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI            
                     LV ASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI            
                     LVVASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQI            
gi|511782578|-130579 cgggtgagcaggtgacgggcaaataactgagcccatca            
                     tttcccttggacccatggtcgagtataaccgcttatat            
                     aggggggcgcgcgctgccgccgaagggccggggcgcgt            


SPP00001359_2.0   39                           VSXGYRRVFEEYMRVISQRYPDI 
                                               VSXGYRRVFEEYMRVISQRYPDI 
                                C:C[tgt]       VSXGYRRVFEEYMRVISQRYPDI 
gi|511782578|-130465 TGGTGAGTA  Intron 1   CAGTgttgtacgtggtacgaacctcga 
                       <2-----[130463:10533-2> tcggaggttaaatgttgagacat 
                                               ccattgggtggcggtccggcacc 


SPP00001359_2.0   63 RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY                          HIASFLSVFK 
                     RIEGENYLPQPIY           R:R[aga]       HIASFLSVFK 
gi|511782578|-105264 cagggatccccatAGGTAAGAA  Intron 2   TAGAcagttctgta 
                     gtagaaatcacta  <2-----[105223:10434-2> atccttctta 
                     ctaagtcctaaat                          caatcaacca 


SPP00001359_2.0   87 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
                     LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                  
gi|511782578|-104314 cgtagtaaggagctgttgacgcaatctgcgaa                  
                     ttttgttttgaactcttgtaccgtgaggaaaa                  
                     aaaacaattcgttttctcgattccgggcaatg                  


SPP00001359_2.0  119                        VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
                                            VYACMMVFFLSNMIENQCMSTGAFEI 
gi|511782578|-104218 GTATGTA  Intron 3   TAGgtgtaagtttaaaagactataggtga 
                     <0-----[104218:10229-0>tacgttttttgattaaagtccgctat 
                                            ctatggtccgccgtgcgtgaatatga 


SPP00001359_2.0  145 TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN                          VPVWSKLESGHLPSMQQLVQ 
                     TLN          D:D[gat]        VPVWSKLESGHLPSMQQLVQ 
gi|511782578|-102215 ataGGTAGGTT  Intron 4   TAGATgcgttacgtgccctacccgc 
                     cta <1-----[102205:10012-1>  tctgcatacgatcctaatta 
                     tat                          atggtggattttacgaatta 


SPP00001359_2.0  169 ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
                     ILDNEMKLNVHMDSIPHHRS                              
gi|511782578|-100059 acgagaacagcagtacccct                              
                     ttaaatatatatactcaagc                              
                     ttctaggctgtgtacactaa                              


//
Making a C in phase 2 intron
Making a R in phase 2 intron
Making a D in phase 1 intron
>gi|511782578|gb|CM001956.1|:subseq(39963998,230579).pep
LVVASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQICVSXGYRRVFEEYMRVISQRYP
DIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENKVY
ACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDNEMKLNVHM
DSIPHHRS
//
>gi|511782578|gb|CM001956.1|:subseq(39963998,230579).[130579:99998].sp
CTAGTGGTGGCGTCGGCGATGGTCCGGAGCGAGGCCTCGGCCAATCTGGGCGGCGTGCCC
AGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCGCTGCTCAAGTTCCAGATTTGTGTC
TCCTGAGGTTATAGGCGGGTGTTTGAGGAGTACATGCGGGTTATCAGCCAGCGGTACCCA
GACATCCGCATTGAAGGAGAGAATTACCTCCCTCAACCAATATATAGACACATAGCATCT
TTCCTATCAGTCTTCAAACTAGTATTAATAGGCTTAATAATTGTTGGCAAGGATCCTTTT
GCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAGTGGGGCCAAGAAAATAAGGTCTAT
GCATGTATGATGGTTTTCTTCTTGAGCAACATGATTGAGAACCAGTGTATGTCAACAGGT
GCATTTGAGATAACTTTAAATGATGTACCTGTGTGGTCTAAGCTGGAATCTGGTCATCTT
CCATCCATGCAACAACTTGTTCAAATTCTTGACAATGAAATGAAGCTCAATGTGCATATG
GATTCAATCCCACACCATCGATCA
//
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	match	130579	100000	371.11	-	.	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	cds	130579	130464	0.00	-	0	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	intron	130463	105335	0.00	-	.	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	cds	105334	105224	0.00	-	1	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	intron	105223	104346	0.00	-	.	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	cds	104345	104219	0.00	-	1	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	intron	104218	102294	0.00	-	.	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	cds	102293	102206	0.00	-	0	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	intron	102205	100122	0.00	-	.	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
gi|511782578|gb|CM001956.1|:subseq(39963998,230579)	GeneWise	cds	100121	100000	0.00	-	2	gi|511782578|gb|CM001956.1|:subseq(39963998,230579)-genewise-prediction-1
//