Output_id:  SelT.5.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782578|gb|CM001956.1|
-Program        genewise
-Query name     gi|143771645|ref|NP_001006557.3| selenoprotein T [Gallus gallus] gi|172045965|sp|Q5ZJN8.3|SELT_CHICK RecName: Full=Selenoprotein T_ Short=SelT_ Flags: Precursor
-Query range    12-199     length:199   coverage: 0.94
-Profile range  27-488     length:488   coverage: 0.95    sec_position: [282]
-ASI:           0.3151     (ignoring gaps: 0.3808)
-AWSIc:         0.6428     Z-score: 1.468
-AWSIw:         0.6575     Z-score: 1.661
-State          kept

------- alignment -------
Query   -------LLLLAALAGPGGSAEQGGVPAKKLRMAYATGPLLKFQIC <---Intron---> VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
               |// /|/     ||  ||||/|/|/| |||||||||||| <  25129nt   > ||||||||||||||||||||||||||||||||||||| 
Target  MRLLLLLLVVASAMVRSEASANLGGVPSKRLKMQYATGPLLKFQIC                VSUGYRRVFEEYMRVISQRYPDIRIEGENYLPQPIYR 
        aaccccccgggtgagcaggtgacgggcaaataactgagcccatcat                gttgtacgtggtacgaacctcgacagggatccccata 
        tgttttttttcccttggacccatggtcgagtataaccgcttatatg   gt     ag    tcggaggttaaatgttgagacatgtagaaatcactag 
        ggtggtcaggggggcgcgcgctgccgccgaagggccggggcgcgt                tccattgggtggcggtccggcaccctaagtcctaaat  
                                                                        *                                   

Query   <---Intron---> HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK <---Intron---> VYACMMVFFLSNMIENQCMSTGAFEIT
        <   878nt    > |||||||||||||||||||||||||||||||||||||||||| <   1925nt   > |||||||||||||||||||||||||||
Target                 HIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK                VYACMMVFFLSNMIENQCMSTGAFEIT
                       cagttctgtacgtagtaaggagctgttgacgcaatctgcgaa                gtgtaagtttaaaagactataggtgaa
          gt     ag    atccttcttattttgttttgaactcttgtaccgtgaggaaaa   gt     ag    tacgttttttgattaaagtccgctatc
                      acaatcaaccaaaaacaattcgttttctcgattccgggcaatg                ctatggtccgccgtgcgtgaatatgat
                                                                                                            

Query   LND <---Intron---> VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMESMPHHRS
        ||| <   2084nt   > ||||||||||||||||||||||||||||||||/|/|||||
Target  LND                VPVWSKLESGHLPSMQQLVQILDNEMKLNVHMDSIPHHRS
        tag                gcgttacgtgccctacccgcacgagaacagcagtacccct
        ta    gt     ag   atctgcatacgatcctaattattaaatatatatactcaagc
        at                tatggtggattttacgaattattctaggctgtgtacactaa
                                                                   
------- positions -------
Exon 1    40094462     40094598
Exon 2    40069222     40069332
Exon 3    40068217     40068343
Exon 4    40066204     40066291
Exon 5    40063998     40064119

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *