Command line: [exonerate -m p2g --showtargetgff -q SelT.fa.U_to_X -t gi|511782570|gb|CM001964.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00001359_2.0 # Protein # Selenoprotein T (SelT) # Macaque (Macaca mulatta) 
        Target: gi|511782570|gb|CM001964.1|:subseq(30024089,200277) Chlorocebus sabaeus isolate 1994-021 chromosome 23, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 337
   Query range: 14 -> 107
  Target range: 100277 -> 99999

     15 : AsnLeuGlyGlyValProSerLysArgLeuLysMetGlnTyrAlaThrGlyProLeuL :     34
          |||||||||.!!||||||||||||||||||!!.|||||||||.!!||| !!|||||||
          AsnLeuGlySerValProSerLysArgLeuAsnMetGlnTyrThrThrArgProLeuL
 100277 : AATCTGGGCAGTGTGCCCAGCAAGAGATTAAACATGCAATACACCACAAGGCCACTGC : 100220

     35 : euLysPheGlnIleCysValSerUnkGlyTyrArgArgValPheGluGluTyrMetAr :     53
          |||||||||||||||||||||||   .!!|||||| !!||||||||||||:!!||| !
          euLysPheGlnIleCysValSer***SerTyrArgTrpValPheGluGluHisMetTr
 100219 : TCAAGTTCCAGATTTGTGTTTCCTAAAGTTATAGGTGGGTGTTTGAGGAGCACATGTG : 100163

     54 : gValIleSerGlnArgTyrProAspIle--ArgIleGluGlyGluAsnTyrLeuProG :     72
          !|||||||||||||||||||||||||||##   ! !:!!|||||||||||||||||||
          pValIleSerGlnArgTyrProAspIle##---ThrLysGlyGluAsnTyrLeuProG
 100162 : GGTTATTAGTCAGCGGTACCCAGACATCAC---ACCAAAGGAGAGAATTACCTCCCTC : 100107

     73 : lnProIleTyrArgHisIleAlaSerPheLeuSerValPheLysLeuValLeuIleGl :     91
          ||||||||||||||||||||||||||||||||!!!!.!|||!!.||||||||||||||
          lnProIleTyrArgHisIleAlaSerPheLeuThrAlaPheAsnLeuValLeuIleGl
 100106 : AACCAATATATAGACACATAGCATCTTTCCTGACAGCCTTCAATCTAGTACTAATAGG : 100050

     92 : yLeuIleIleValGlyLysAspProPheAlaPhePheGlyMetGlnAla :    107
          |||||||||||||! !||||||||||||||||||||||||!!:||||||
          yLeuIleIleValValLysAspProPheAlaPhePheGlyIleGlnAla
 100049 : ATTAATAATTGTTGTCAAGGATCCTTTTGCTTTCTTTGGCATACAAGCT : 100000

vulgar: SPP00001359_2.0 14 107 . gi|511782570|gb|CM001964.1|:subseq(30024089,200277) 100277 99999 - 337 M 48 144 F 0 2 G 1 0 M 44 132
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-07
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782570|gb|CM001964.1|:subseq(30024089,200277)	exonerate:protein2genome:local	gene	100000	100277	337	-	.	gene_id 1 ; sequence SPP00001359_2.0 ; gene_orientation .
gi|511782570|gb|CM001964.1|:subseq(30024089,200277)	exonerate:protein2genome:local	cds	100000	100277	.	-	.	
gi|511782570|gb|CM001964.1|:subseq(30024089,200277)	exonerate:protein2genome:local	exon	100000	100277	.	-	.	insertions 0 ; deletions 1 ; frameshifts 2
gi|511782570|gb|CM001964.1|:subseq(30024089,200277)	exonerate:protein2genome:local	similarity	100000	100277	337	-	.	alignment_id 1 ; Query SPP00001359_2.0 ; Align 100278 15 144 ; Align 100132 64 132
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis