Output_id:  SelS.1.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782564|gb|CM001970.1|
-Program        genewise
-Query name     gi|168693663|ref|NP_001108229.1| selenoprotein S [Canis lupus familiaris]
-Query range    1-189      length:190   coverage: 0.99
-Profile range  1-264      length:266   coverage: 0.99    sec_position: [264]
-ASI:           0.5004     (ignoring gaps: 0.554)
-AWSIc:         0.774     Z-score: 0.93
-AWSIw:         0.7816     Z-score: 1.033
-State          kept

------- alignment -------
Query   MERDGQQLSARPALETEGLRYLHVTV <---Intron---> GSLLATYGWYIVFSCILLYVVFQKLSTRLRALRQRQLDRAEAAVE <---Intron--
        |||/   |||||||||||||/||||| <   662nt    > |||||/|||||||||||||||||||| ||||||||||/|| |/|| <   1178nt  
Target  MEREEDSLSARPALETEGLRFLHVTV                GSLLASYGWYIVFSCILLYVVFQKLSARLRALRQRQLERAAASVE             
        agcgggtttgccgcgaggcctccgag                gttcgatgttagtatacctggtcactgccagtacaccgcgggtgg             
        tagaaactccgcctacagtgttatc    gt     ag   tgcttcgaggatttggtttatttaatccgtgctgagatagcccct    gt     ag 
        gggagtcgcgggcggcgagccgccg                gctggcctcgccccccctccgctggtccggacgggggggatgttg              
                                                                                                            

Query   -> PDVVVKRQEALAAARLKMQEELNAQVEKHKEKLRQ <---Intron---> LEEQKRRQKIEMWDSMQEGKSYKGNARKHP <---Intron---> 
         > |||||||||||||||||||||||||/|||||||/| <   573nt    > |||/||||||||||||||||||||||/|   <    94nt    > 
Target     PDVVVKRQEALAAARLKMQEELNAQIEKHKEKLKQ                LEEEKRRQKIEMWDSMQEGKSYKGNAKKPQ                
           cggggaccggtgggctaacggcagcagacagacac                cgggaaacaagatgaacggaatagagaacc                
          acatttagaactcccgtataaatacataaaaaataa   gt     ag    taaaaggaatatgagtaagagaagacaaca   gt     ag    
          atttttaaaataattagagaaaatgatagtgaagag                taaaagaggtaggccgaacatcaataggtg                
                                                                                                            

Query   EEDSPGPSTSSVLPKRKPDRKPLRGGG <---Intron---> YNPLSGEGGGACSWRPGRRGPSSGGU-
        ||||||||||||/ ||| ||||||||| <   1591nt   > ||||||||||/||||||||||||||| 
Target  EEDSPGPSTSSVVVKRKSDRKPLRGGG                YNPLSGEGGGSCSWRPGRRGPSSGGUS
        gggacgctattgggacatgcactcggg                tacttgggggatttacgcagcttggta
        aaagcgccccctttagacagactggg    gt     ag   gaactcgagggggcggcggggcccgggg
        gacttgtctatccgagagcagggggt                ttctgttaatacccgatacacaattaac
                                                                            * 
------- positions -------
Exon 1    19732248     19732323
Exon 2    19731451     19731585
Exon 3    19730166     19730272
Exon 4    19729503     19729592
Exon 5    19729330     19729408
Exon 6    19727656     19727738

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *