genewise output
Score 394.61 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000092_2.0    1 MSPRRTLPRPLSLCLSLCLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSL    CLCLCLAAALGSAQS                  
                     MSPRRTLPRPLSL----CLCLCLAAALGSAQS                  
gi|511782582|gb49876 aacccaccccctc    tctctcgggcgagct                  
                     tgcggctcgctct    gtgtgtccctggcac                  
                     gcgggccgcccgc    cccccgcgtgatggc                  


SPP00000092_2.0   33                           SCRDKKNCKVVFSQQELRKRLTP 
                                               SCRDKKNCKVVFSQQELRKRLTP 
                               G:G[ggg]        SCRDKKNCKVVFSQQELRKRLTP 
gi|511782582|gb49960 GGTAAGTT  Intron 1   CAGGGttagaaataggttccgcaaccac 
                      <1-----[49961:99991]-1>  cggaaaagatttcaaatgagtcc 
                                               atgtagctggctcggaggggaac 


SPP00000092_2.0   57 LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE                          AFEGEYTHHKD 
                     LQYHVTQEKGTE           S:S[agt]       AFEGEYTHHKD 
gi|511782582|g100063 cctcgacgagagAGGTAAGGT  Intron 2   CAGTgtgggtaccag 
                     taaatcaaagca  <2-----[100101:10170-2> ctagaacaaaa 
                     ggctctggagca                          ctaagcatcat 


SPP00000092_2.0   81 PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF                          SETKFDSGS 
                     PGIYKCVVCGTPLF           K:K[aag]       SETKFDSGS 
gi|511782582|g101736 cgatatggtgacttAAGTAAGTA  Intron 3   CAGGtgaatgtgt 
                     cgtaagttggcctt  <2-----[101780:13380-2> cacatacgc 
                     taatattttatagt                          aacatccta 


SPP00000092_2.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVI+SEAITFTDDFSYGM 
                               G:G[ggt]        WPSFHDVISSEAITFTDDFSYGM 
gi|511782582|g133836 GGTATGTT  Intron 4   CAGGTtcttcggaatggaataggtttga 
                      <1-----[133837:22430-1>  gcctaattgcactctcaatcagt 
                                               gtacctgcttgacacatctctgg 


SPP00000092_2.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
gi|511782582|g224373 ccggaattcGTGAGTT  Intron 5   CAGtggccgcatgggcccag 
                     agtacggca<0-----[224400:23376-0>ggcatgattaagcgccg 
                     cggaacctg                       tttctgcttttgttatg 


SPP00000092_2.0  155 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL            
                     KRYCINSAALSFTPADSSG AEGGSGVASPAQADKAEL            
                     KRYCINSAALSFTPADSSGAAEGGSGVASPAQADKAEL            
gi|511782582|g233812 aattaatggtttacggaaggggggagggacgcggaggc            
                     agagtaccctctcccagggccaggggtcgccacaacat            
                     aaccatgtcgtcatgtctcccgactgcccacgacaggc            


//
Making a G in phase 1 intron
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>gi|511782582|gb|CM001952.1|:subseq(60920431,333925).pep
MSPRRTLPRPLSLCLCLCLAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQE
KGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVISSEAITFTDDF
SYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGAAEGGSGVASP
AQADKAEL
//
>gi|511782582|gb|CM001952.1|:subseq(60920431,333925).[49876:233925].sp
ATGAGCCCGCGGCGGACCCTCCCGCGCCCCCTCTCGCTCTGCCTCTGCCTCTGCCTGGCC
GCGGCTCTGGGAAGTGCGCAGTCCGGGTCATGTAGGGATAAAAAGAACTGTAAGGTGGTC
TTTTCCCAGCAGGAACTGAGGAAGCGGCTAACACCCCTGCAGTACCATGTCACTCAGGAG
AAAGGGACCGAAAGTGCCTTTGAAGGAGAGTACACACATCACAAAGATCCTGGAATATAT
AAATGTGTTGTTTGTGGAACTCCATTGTTTAAGTCAGAAACCAAATTTGACTCCGGTTCA
GGTTGGCCTTCATTCCACGATGTGATCAGTTCTGAGGCAATCACATTCACAGATGACTTT
TCCTATGGGATGCACCGGGTGGAAACAAGCTGCTCTCAGTGTGGTGCTCACCTTGGGCAC
ATTTTTGATGATGGGCCTCGTCCAACTGGGAAAAGATACTGCATAAATTCGGCTGCCTTG
TCTTTCACACCTGCGGATAGCAGTGGCGCCGCCGAGGGAGGCAGTGGGGTCGCCAGCCCA
GCCCAGGCAGACAAAGCGGAGCTC
//
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	match	49876	233925	397.60	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	49876	49960	0.00	+	0	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	intron	49961	99991	0.00	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	99992	100100	0.00	+	2	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	intron	100101	101701	0.00	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	101702	101779	0.00	+	1	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	intron	101780	133807	0.00	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	133808	133836	0.00	+	1	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	intron	133837	224301	0.00	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	224302	224399	0.00	+	2	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	intron	224400	233760	0.00	+	.	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
gi|511782582|gb|CM001952.1|:subseq(60920431,333925)	GeneWise	cds	233761	233925	0.00	+	0	gi|511782582|gb|CM001952.1|:subseq(60920431,333925)-genewise-prediction-1
//