Output_id:  SelR.5.cysteine
----------  ---------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782582|gb|CM001952.1|
-Program        exonerate
-Query name     gi|119892367|ref|XP_875267.2| PREDICTED: similar to methionine sulfoxide reductase B3 isoform 4 [Bos taurus]
-Query range    1-191      length:191   coverage: 1.0
-Profile range  1-792      length:792   coverage: 1.0    sec_position: [448]
-ASI:           0.3298     (ignoring gaps: 0.4678)
-AWSIc:         0.7876     Z-score: 0.48
-AWSIw:         0.7833     Z-score: 0.44
-State          kept

------- alignment -------
Query   MSPRRTLPRPFLLCLCLSLCLAAAAARGA <---Intron---> VQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTES <---Intron--->
        ||||||||||  ||||| |  |  /|/ | <  50019nt   > / |||||||||||||||||||||||||||||||||||||| <   1601nt   >
Target  MSPRRTLPRPLSLCLCLCLAAALGSAQSA                LFSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTES               
        aacccaccccctctctctcgggcgagctg                cttgttagaaataggttccgcaaccaccctcgacgagaga               
        tgcggctcgctctgtgtgtccctggcac    gt     ct   cttcgcggaaaagatttcaaatgagtcctaaatcaaagcag   gt     ag   
        gcgggccgcccgccccccgcgtgatggc                tctagatgtagctggctcggaggggaacggctctggagca                
                                                                                                            

Query    AFEGEYTHHKDPGIYKCVVCGTPLFK <---Intron---> SETKFDSGSG <---Intron---> WPSFHDVINSDAITFTDDFSYGMHRVETSCS
         |||||||||||||||||||||||||| <  32028nt   > |||||||||| <  90465nt   > ||||||||/|/||||||||||||||||||||
Target   AFEGEYTHHKDPGIYKCVVCGTPLFK                SETKFDSGSG                WPSFHDVISSEAITFTDDFSYGMHRVETSCS
         gtgggtaccagcgatatggtgactta                tgaatgtgtg                tcttcggaatggaataggtttgaccggaatt
         ctagaacaaaacgtaagttggcctta   gt     ag    cacatacgc    gt     ag   ggcctaattgcactctcaatcagtagtacggc
        tctaagcatcattaatattttatagt                gaacatccta                tgtacctgcttgacacatctctggcggaacct
                                                                                                            

Query   Q <---Intron---> CGAHLGHIFDDGPRPTGKRYUINSASLSFSPAESSG-AQGDSAGGSPAPGDKTEL
        | <   9361nt   > |||||||||||||||||||| ||||/|||/||/||| |/| |   |||  || ||
Target  Q                CGAHLGHIFDDGPRPTGKRYCINSAALSFTPADSSGAAEGGSGVASPAQADKAEL
        c                tggccgcatgggcccagaattaatggtttacggaaggggggagggacgcggaggc
        a   gt     ag    ggcatgattaagcgccgagagtaccctctcccagggccaggggtcgccacaacat
        g                tttctgcttttgttatgaaccatgtcgtcatgtctcccgactgcccacgacaggc
                                             *                                  
------- positions -------
Exon 1    60970307     60970391
Exon 2    61020411     61020531
Exon 3    61022133     61022210
Exon 4    61054239     61054267
Exon 5    61144733     61144830
Exon 6    61154192     61154356

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *