Output_id:  SelR.11.cysteine
----------  ----------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782584|gb|CM001949.1|
-Program        exonerate
-Query name     gi|47086197|ref|NP_998086.1| methionine sulfoxide reductase B2 [Danio rerio] gi|82185713|sp|Q6NW52.1|MSRB2_DANRE RecName: Full=Methionine-R-sulfoxide reductase B2, mitochondrial_ Flags: Precursor gi|45709581|gb|AAH67722.1| Zgc:85965 [Danio rerio]
-Query range    49-179     length:180   coverage: 0.73
-Profile range  311-791    length:792   coverage: 0.61    sec_position: [448]
-ASI:           0.4303     (ignoring gaps: 0.4983)
-AWSIc:         0.7458     Z-score: -0.04
-AWSIw:         0.7731     Z-score: 0.275
-State          kept

------- alignment -------
Query   STDWQRKLSPEQYVVTREKGTEV <---Intron---> PFSGIYLNHNEVGMYHCVCCDSPLFS <---Intron---> SEAKYDAGAGWPSFCEAHG
         //||/||/|||/ /|||||||  <   5942nt   > ||||||||/ | |||||||||||||| <  10263nt   > || || /| ||||| ||||
Target  KSEWQKKLTPEQFYITREKGTEP                PFSGIYLNNKEAGMYHCVCCDSPLFS                SEKKYCSGTGWPSFSEAHG
        aagtcaacacgcttaaagagagc                ctagatcaaagggatctgttgaccta                tgaatttgagtctttggcg
        agagaaatccaatatcgaagcac   gt     ag    ctggtataaaacgtaagtggagcttg   gt     ag    caaaagcgcggcctcacag
        gtggagaacaggcccgaagagag                tctgccgtcgaaagtttgccctacc                ttgagcctctggtatcgctt
                                                                                                            

Query   TWEKDESHANIVRRPDNSLGSTGTEVICKH <---Intron---> CDAHLGHVFEDGPDPTGQRFUINSVALNFKPRE-
        |   ||||  |/|| | ||||  ||||||  <   1279nt   > |/||||||| ||| | |||| |||||| ||||/ 
Target  TSGSDESHTGILRRLDTSLGSARTEVICKQ                CEAHLGHVFPDGPGPNGQRFCINSVALKFKPRKH
        atgtggacagacaccgattgtgcaggatac                tggccgcgtcggcgcagcattaaaggcatacaac
        ccgcaagacgttggtacctgccgcattgaa   gt     ag    gacatgattcagcgcagagtgtagtctatacgaa
        atcttaccagcgatgccgaaatcagcccgg                tattatcgtttatgcttggtccctgtggcaagac
                                                                          *             
------- positions -------
Exon 1    22871762     22871830
Exon 2    22877773     22877849
Exon 3    22888113     22888260
Exon 4    22889540     22889641

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TGA
 *