Command line: [exonerate -m p2g --showtargetgff -q SelR2.U_to_X -t gi|511782584|gb|CM001949.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000091_2.0 # Protein # Methionine-R-sufoxide reductase 2 (SelR2) # Human (Homo sapiens) 
        Target: gi|511782584|gb|CM001949.1|:subseq(22771732,217909) Chlorocebus sabaeus isolate 1994-021 chromosome 9, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 932
   Query range: 0 -> 182
  Target range: 91465 -> 117909

      1 : MetAlaArgLeuLeuTrpLeuLeuArgGlyLeuThrLeuGlyThrAlaProArgArgA :     20
          ||||||||||||||||||||||||||||||||||||||||||.!!|||||||||||||
          MetAlaArgLeuLeuTrpLeuLeuArgGlyLeuThrLeuGlyAlaAlaProArgArgA
  91466 : ATGGCGCGGCTCCTCTGGTTGCTCCGAGGCCTGACCCTCGGAGCTGCGCCTCGGCGGG :  91523

     21 : laValArgGlyGlnAlaGlyGlyGlyGlyProGlyThrGlyProGlyLeuGlyGluAl :     39
          |||||||||||!:!||||||||||||! !||| !!|||||||||! !|||||||||||
          laValArgGlyArgAlaGlyGlyGlyGluProCysThrGlyProValLeuGlyGluAl
  91524 : CGGTGCGGGGCCGAGCGGGCGGCGGCGAGCCCTGCACTGGGCCGGTACTGGGGGAGGC :  91580

     40 : a{G}  >>>> Target Intron 1 >>>>  {ly}SerLeuAlaThrCysGluLeu :     47
          |{|}           8414 bp           {||}|||||||||||||||||||||
          a{G}++                         ++{ly}SerLeuAlaThrCysGluLeu
  91581 : A{G}gt.........................ag{GG}TCTCTTGCAACGTGTGAGCTG : 100018

     48 : ProLeuAlaLysSerGluTrpGlnLysLysLeuThrProGluGlnPheTyrValThrA :     67
          |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||
          ProLeuAlaLysSerGluTrpGlnLysLysLeuThrProGluGlnPheTyrIleThrA
 100019 : CCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCAGAGCAGTTCTACATCACGA : 100078

     68 : rgGluLysGlyThrGluPro  >>>> Target Intron 2 >>>>  ProPheSer :     76
          ||||||||||||||||||||           5942 bp           |||||||||
          rgGluLysGlyThrGluPro++                         ++ProPheSer
 100079 : GAGAAAAGGGAACGGAACCGgt.........................agCCTTTCAGT : 106047

     77 : GlyIleTyrLeuAsnAsnLysGluAlaGlyMetTyrHisCysValCysCysAspSerP :     96
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GlyIleTyrLeuAsnAsnLysGluAlaGlyMetTyrHisCysValCysCysAspSerP
 106048 : GGGATCTACCTGAATAACAAGGAAGCAGGAATGTATCATTGTGTGTGCTGCGACAGTC : 106107

     97 : roLeuPhe{Se}  >>>> Target Intron 3 >>>>  {r}SerGluLysLysTy :    104
          ||||||||{||}           10263 bp          {|}||||||||||||||
          roLeuPhe{Se}++                         ++{r}SerGluLysLysTy
 106108 : CACTCTTC{AG}gt.........................ag{T}TCTGAGAAAAAGTA : 116394

    105 : rCysSerGlyThrGlyTrpProSerPheSerGluAlaHisGlyThrSerGlySerAsp :    123
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          rCysSerGlyThrGlyTrpProSerPheSerGluAlaHisGlyThrSerGlySerAsp
 116395 : CTGCTCTGGCACTGGGTGGCCTTCATTTTCCGAGGCCCATGGTACATCTGGCTCTGAT : 116451

    124 : GluSerHisThrGlyIleLeuArgArgLeuAspThrSerLeuGlySerAlaArgThrG :    143
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          GluSerHisThrGlyIleLeuArgArgLeuAspThrSerLeuGlySerAlaArgThrG
 116452 : GAAAGCCACACAGGGATCCTGAGACGTCTGGACACCTCGTTAGGATCAGCTCGCACAG : 116511

    144 : luValValCysLysGln  >>>> Target Intron 4 >>>>  CysGluAlaHis :    152
          |||||:!!|||||||||           1279 bp           ||||||||||||
          luValIleCysLysGln++                         ++CysGluAlaHis
 116512 : AGGTCATCTGCAAGCAGgt.........................agTGTGAAGCTCAT : 117817

    153 : LeuGlyHisValPheProAspGlyProGlyProAsnGlyGlnArgPheCysIleAsnS :    172
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
          LeuGlyHisValPheProAspGlyProGlyProAsnGlyGlnArgPheCysIleAsnS
 117818 : CTAGGTCACGTGTTTCCTGATGGACCTGGGCCCAATGGTCAGAGGTTTTGCATCAACA : 117877

    173 : erValAlaLeuLysPheLysProArgLysHis :    182
          ||||||||||||||||||||||||||||||||
          erValAlaLeuLysPheLysProArgLysHis
 117878 : GTGTGGCTCTGAAGTTCAAACCAAGGAAACAC : 117909

vulgar: SPP00000091_2.0 0 182 . gi|511782584|gb|CM001949.1|:subseq(22771732,217909) 91465 117909 + 932 M 39 117 S 0 1 5 0 2 I 0 8410 3 0 2 S 1 2 M 33 99 5 0 2 I 0 5938 3 0 2 M 25 75 S 0 2 5 0 2 I 0 10259 3 0 2 S 1 1 M 49 147 5 0 2 I 0 1275 3 0 2 M 34 102
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-06
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	gene	91466	117909	932	+	.	gene_id 1 ; sequence SPP00000091_2.0 ; gene_orientation +
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	cds	91466	91583	.	+	.	
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	exon	91466	91583	.	+	.	insertions 0 ; deletions 0
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice5	91584	91585	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	intron	91584	99997	.	+	.	intron_id 1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice3	99996	99997	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	cds	99998	100098	.	+	.	
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	exon	99998	100098	.	+	.	insertions 0 ; deletions 0
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice5	100099	100100	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	intron	100099	106040	.	+	.	intron_id 2
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice3	106039	106040	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	cds	106041	106117	.	+	.	
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	exon	106041	106117	.	+	.	insertions 0 ; deletions 0
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice5	106118	106119	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	intron	106118	116380	.	+	.	intron_id 3
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice3	116379	116380	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	cds	116381	116528	.	+	.	
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	exon	116381	116528	.	+	.	insertions 0 ; deletions 0
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice5	116529	116530	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	intron	116529	117807	.	+	.	intron_id 4
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	splice3	117806	117807	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	cds	117808	117909	.	+	.	
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	exon	117808	117909	.	+	.	insertions 0 ; deletions 0
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	exonerate:protein2genome:local	similarity	91466	117909	932	+	.	alignment_id 1 ; Query SPP00000091_2.0 ; Align 91466 1 117 ; Align 100000 41 99 ; Align 106041 74 75 ; Align 116382 100 147 ; Align 117808 149 102
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis