genewise output
Score 385.51 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
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SPP00000091_2.0    1 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEA           
                     MARLLWLLRGLTLG APRRAVRG+AGGG P TGP LGEA           
                     MARLLWLLRGLTLGAAPRRAVRGRAGGGEPCTGPVLGEA           
gi|511782584|gb91466 agcccttccgcacgggcccggcgcgggggctagcgcggg           
                     tcgttgttggtctgcccggctgggcgggacgcgcttgac           
                     gggccggcacgccatgtgggggcagcccgcctggaggga           


SPP00000091_2.0   40                           SLATCELPLAKSEWQKKLTPEQF 
                                               SLATCELPLAKSEWQKKLTPEQF 
                               G:G[ggg]        SLATCELPLAKSEWQKKLTPEQF 
gi|511782584|gb91583 GGTAGGAC  Intron 1   CAGGGtcgatgcccgaagtcaacacgct 
                      <1-----[91584:99997]-1>  ctccgatctcagagaaatccaat 
                                               ttagtggttcgtggagaacaggc 


SPP00000091_2.0   64 YVTREKGTEP                       PFSGIYLNNKEAGMYH 
                     Y+TREKGTEP                       PFSGIYLNNKEAGMYH 
                     YITREKGTEP                       PFSGIYLNNKEAGMYH 
gi|511782584|g100069 taaagagagcGTAAGCT  Intron 2   CAGctagatcaaagggatc 
                     atcgaagcac<0-----[100099:10604-0>ctggtataaaacgtaa 
                     ccgaagagag                       tctgccgtcgaaagtt 


SPP00000091_2.0   90 CVCCDSPLF                          SEKKYCSGTGWPSF 
                     CVCCDSPLF                          SEKKYCSGTGWPSF 
                     CVCCDSPLF           S:S[agt]       SEKKYCSGTGWPSF 
gi|511782584|g106089 tgttgacctAGGTAAGAT  Intron 3   CAGTtgaatttgagtctt 
                     gtggagctt  <2-----[106118:11638-2> caaaagcgcggcct 
                     tgccctacc                          tgagcctctggtat 


SPP00000091_2.0  114 SEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ               
                     SEAHGTSGSDESHTGILRRLDTSLGSARTEV+CKQ               
                     SEAHGTSGSDESHTGILRRLDTSLGSARTEVICKQ               
gi|511782584|g116424 tggcgatgtggacagacaccgattgtgcaggatac               
                     cacagccgcaagacgttggtacctgccgcattgaa               
                     cgcttatcttaccagcgatgccgaaatcagcccgg               


SPP00000091_2.0  149                        CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGPGPNGQRFCINSVA 
                                            CEAHLGHVFPDGPGPNGQRFCINSVA 
gi|511782584|g116529 GTGAGAT  Intron 4   CAGtggccgcgtcggcgcagcattaaagg 
                     <0-----[116529:11780-0>gacatgattcagcgcagagtgtagtc 
                                            tattatcgtttatgcttggtccctgt 


SPP00000091_2.0  175 LKFKPRKH                                          
                     LKFKPRKH                                          
                     LKFKPRKH                                          
gi|511782584|g117886 catacaac                                          
                     tatacgaa                                          
                     ggcaagac                                          


//
Making a G in phase 1 intron
Making a S in phase 2 intron
>gi|511782584|gb|CM001949.1|:subseq(22771732,217909).pep
MARLLWLLRGLTLGAAPRRAVRGRAGGGEPCTGPVLGEAGSLATCELPLAKSEWQKKLTP
EQFYITREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
GSDESHTGILRRLDTSLGSARTEVICKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR
KH
//
>gi|511782584|gb|CM001949.1|:subseq(22771732,217909).[91466:117909].sp
ATGGCGCGGCTCCTCTGGTTGCTCCGAGGCCTGACCCTCGGAGCTGCGCCTCGGCGGGCG
GTGCGGGGCCGAGCGGGCGGCGGCGAGCCCTGCACTGGGCCGGTACTGGGGGAGGCAGGG
TCTCTTGCAACGTGTGAGCTGCCTCTTGCCAAGAGTGAGTGGCAAAAGAAACTAACCCCA
GAGCAGTTCTACATCACGAGAGAAAAGGGAACGGAACCGCCTTTCAGTGGGATCTACCTG
AATAACAAGGAAGCAGGAATGTATCATTGTGTGTGCTGCGACAGTCCACTCTTCAGTTCT
GAGAAAAAGTACTGCTCTGGCACTGGGTGGCCTTCATTTTCCGAGGCCCATGGTACATCT
GGCTCTGATGAAAGCCACACAGGGATCCTGAGACGTCTGGACACCTCGTTAGGATCAGCT
CGCACAGAGGTCATCTGCAAGCAGTGTGAAGCTCATCTAGGTCACGTGTTTCCTGATGGA
CCTGGGCCCAATGGTCAGAGGTTTTGCATCAACAGTGTGGCTCTGAAGTTCAAACCAAGG
AAACAC
//
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	match	91466	117909	385.51	+	.	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	cds	91466	91583	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	intron	91584	99997	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	cds	99998	100098	0.00	+	2	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	intron	100099	106040	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	cds	106041	106117	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	intron	106118	116380	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	cds	116381	116528	0.00	+	1	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	intron	116529	117807	0.00	+	.	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
gi|511782584|gb|CM001949.1|:subseq(22771732,217909)	GeneWise	cds	117808	117909	0.00	+	0	gi|511782584|gb|CM001949.1|:subseq(22771732,217909)-genewise-prediction-1
//