_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 3e-25
 Query name: gi|281371497|ref|NP_001163895.1| selenoprotein X, 1 [Equus caballus]
 Query range: 1-115  (total 116)

 Target: /var/www/seblastian_output/372572657/tempfiles/temptarget.fasta
 Chromosome: gi|511782588|gb|CM001945.1| Strand: -
 Positions:
 -Exon 1  102340       102394
 -Exon 2  100495       100643
 -Exon 3  100029       100143
 -Exon 4  98566        98591

 Redox box: no

Query   MSFCSFFGGEIFQNHFEPG <---Intron---> IYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALKV <---Intron--->
        ||||||||||/|||||||| <   1696bp   > /||||||||||||||||||||||||||||||||||||||||||||||||| <   351bp    >
Target  MSFCSFFGGEVFQNHFEPG                VYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRPEALKV               
        atttattggggtcactgcg                gtgtgatgtgcttactatgcttctcgtagaacggaggaccgcaccggtag               
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaagcactat               
        ggcccccgcgtcgtctgc                cttgtcgtctggccccggtacgccggactgctctccgcgtagctatacgg                
                                                                                                            

Query    SCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPKGK <---Intron---> ESSASQG
         ||||||||||||||||||| ||||||||||||||||||| <   1437bp   > |/|||||
Target   SCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKGK                ETSASQG
         ttgatgagtgcgtcaggcacgctcttataatcatgcaga                gatgtcg
         cggaggagtgaattaagcacgacgtgttggctattcag                aaccccag
        gctcgtctggccgcgctccgaggcacaacccgggtctac                aattccgg
                                  *                                    
 Sequence until next stop: 
CACTAG
 H  * 

 Distance CDS-SECIS: 462 ; UGA-SECIS: 522

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = gi|511782588|gb|CM001945.1| Strand = - Positions = 98103 - 98032
 Found by:  Infernal (score=34.98) Covels (score=23.19)
 Stem2 length = 10   Apical loop length = 17   Insertion in stem2 = 0, 0
 Free Energy = -26.33

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[(((((((((((.................)))))))))))]]}..--..-.))))))}).
 target  CCUGGUCAC---UGCAUGAUCCGCUCUGGUCAAACCCUUCCAGGCCAGCCAGGGUGGGGAUGG--UC-UGUGACCUGC
                         ****           ^^^                       ****