Command line: [exonerate -m p2g --showtargetgff -q SelP.fa.U_to_X -t gi|511782589|gb|CM001944.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000082_2.0 # Protein # Selenoprotein P (SelP) # Human (Homo sapiens) 
        Target: gi|511782589|gb|CM001944.1|:subseq(41494945,107633) Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 1757
   Query range: 0 -> 381
  Target range: 57633 -> 49999

     1 : MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrGlu :    20
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         MetTrpArgSerLeuGlyLeuAlaLeuAlaLeuCysLeuLeuProSerGlyGlyThrGlu
 57633 : ATGTGGAGAAGTCTGGGGCTTGCCCTGGCTCTCTGTCTCCTTCCATCGGGAGGAACAGAG : 57576

    21 : SerGlnAspGlnSerSerLeuCysLysGlnProProAlaTrpSerIleArgAspGlnAsp :    40
         ||||||||||||||||||!!!|||||||||||||||||||||||||||||||||||||||
         SerGlnAspGlnSerSerPheCysLysGlnProProAlaTrpSerIleArgAspGlnAsp
 57575 : AGCCAGGACCAAAGCTCCTTCTGTAAGCAACCCCCAGCCTGGAGCATAAGAGATCAAGAT : 57516

    41 : ProMetLeuAsnSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSerUnkTyr :    60
         |||||||||:!!||||||||||||||||||||||||||||||||||||||||||   |||
         ProMetLeuAspSerAsnGlySerValThrValValAlaLeuLeuGlnAlaSer***Tyr
 57515 : CCAATGCTAGACTCCAATGGTTCAGTGACTGTGGTCGCTCTTCTTCAAGCCAGCTGATAC : 57456

    61 : LeuCysIleLeuGlnAlaSer{Ly}  >>>> Target Intron 1 >>>>  {s}Leu :    69
         |||||||||||||||||||||{||}           1036 bp           {|}|||
         LeuCysIleLeuGlnAlaSer{Ly}++                         ++{s}Leu
 57455 : CTGTGCATACTGCAGGCATCT{AA}gt.........................ag{A}TTG : 56393

    70 : GluAspLeuArgValLysLeuLysLysGluGlyTyrSerAsnIleSerTyrIleValVal :    89
         |||||||||||||||||||||:!!||||||||||||||||||||||||||||||||||||
         GluAspLeuArgValLysLeuGluLysGluGlyTyrSerAsnIleSerTyrIleValVal
 56392 : GAAGACCTGCGAGTAAAACTGGAGAAAGAAGGATATTCTAATATTTCTTATATTGTTGTT : 56333

    90 : AsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsnLysValSerGlu :   109
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnHisGlnGlyIleSerSerArgLeuLysTyrThrHisLeuLysAsnLysValSerGlu
 56332 : AATCATCAAGGAATCTCTTCTCGATTAAAATACACACATCTTAAGAATAAGGTTTCAGAG : 56273

   110 : HisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpThrLeuLeuAsnGly :   129
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         HisIleProValTyrGlnGlnGluGluAsnGlnThrAspValTrpThrLeuLeuAsnGly
 56272 : CATATTCCTGTTTATCAACAAGAAGAAAACCAAACAGATGTCTGGACTCTTTTAAATGGA : 56213

   130 : SerLysAspAspPheLeuIleTyrAsp{Ar}  >>>> Target Intron 2 >>>>   :   139
         |||||||||||||||||||||||||||{||}           2116 bp           
         SerLysAspAspPheLeuIleTyrAsp{Ar}++                         ++
 56212 : AGCAAAGATGACTTCCTCATATATGAC{AG}gt.........................ag : 54067

   140 : {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSerPheLeuThrPheProTyr :   158
         {|}||||||||||||||||||||||||||||||||||||||||||||||||||| !!|||
         {g}CysGlyArgLeuValTyrHisLeuGlyLeuProPheSerPheLeuThrPheSerTyr
 54066 : {A}TGTGGCCGTCTTGTATATCATCTTGGTTTGCCTTTTTCCTTCCTAACTTTCTCATAC : 54010

   159 : ValGluGluAlaIleLysIleAlaTyrCysGluLysLysCysGlyAsnCysSerLeuThr :   178
         |||||||||||||||||||||!.!||||||||||||||||||||||||||||||||||||
         ValGluGluAlaIleLysIleValTyrCysGluLysLysCysGlyAsnCysSerLeuThr
 54009 : GTAGAAGAAGCCATTAAGATTGTTTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACG : 53950

   179 :   >>>> Target Intron 3 >>>>  ThrLeuLysAspGluAspPheCysLysArgV :   189
                    3339 bp           |||||||||||||||||||||||||||!!!|
         ++                         ++ThrLeuLysAspGluAspPheCysLysSerV
 53949 : gt.........................agACTCTCAAAGATGAAGACTTTTGTAAAAGTG : 50578

   190 : alSerLeuAlaThrValAspLysThrValGluThrProSerProHisTyrHisHisGluH :   209
         ||||||||||||||||||||:!!.!!||||||.!!|||..!|||||||||||||||||||
         alSerLeuAlaThrValAspGluAlaValGluAlaProGlnProHisTyrHisHisGluH
 50577 : TATCTTTGGCTACTGTGGATGAAGCAGTTGAAGCTCCACAGCCCCATTACCATCATGAGC : 50518

   210 : isHisHisAsnHisGlyHisGlnHisLeuGlySerSerGluLeuSerGluAsnGlnGlnP :   229
         |||||||||||!!.||||||||||||||||||||||||:!!|||||||||||||||||||
         isHisHisAsnGlnGlyHisGlnHisLeuGlySerSerLysLeuSerGluAsnGlnGlnP
 50517 : ATCATCACAATCAGGGACATCAGCACCTTGGCAGCAGTAAGCTTTCAGAGAATCAGCAAC : 50458

   230 : roGlyAlaProAsnAlaProThrHisProAlaProProGlyLeuHisHisHisHisLysH :   249
         |||||||||||:!!||||||||||||||||||||||||! !|||||||||||||||||||
         roGlyAlaProAspAlaProThrHisProAlaProProAspLeuHisHisHisHisLysH
 50457 : CAGGAGCACCAGATGCTCCTACTCATCCTGCTCCTCCAGACCTTCATCACCACCATAAGC : 50398

   250 : isLysGlyGlnHisArgGlnGlyHisProGluAsnArgAspMetProAlaSerGluAspL :   269
         ||||||||||||||||||||||||||||||||!:! !!|||||||||!.!||||||! !|
         isLysGlyGlnHisArgGlnGlyHisProGluSer***AspMetProGlySerGluGlyL
 50397 : ACAAGGGTCAACATAGGCAGGGTCACCCAGAGAGCTGAGATATGCCAGGAAGTGAAGGTT : 50338

   270 : euGlnAspLeuGlnLysLysLeuCysArgLysArgCysIleAsnGlnLeuLeuCysLysL :   289
         ||||| !!|||||||||||||||!! ||||||||||||||||||||||||||||||||||
         euGlnHisLeuGlnLysLysLeu***ArgLysArgCysIleAsnGlnLeuLeuCysLysL
 50337 : TACAACATCTACAAAAGAAGCTCTGACGAAAGAGATGTATAAATCAATTACTCTGTAAAT : 50278

   290 : euProThrAspSerGluLeuAlaProArgSerUnkCysCysHisCysArgHisLeuIleP :   309
         |||||! !||||||||||||||||||||||||   |||||||||||||||||||||||||
         euProLysAspSerGluLeuAlaProArgSer***CysCysHisCysArgHisLeuIleP
 50277 : TGCCCAAAGATTCAGAGCTGGCTCCTAGGAGCTGATGCTGCCACTGTCGACATCTGATAT : 50218

   310 : heGluLysThrGlySerAlaIleThrUnkGlnCysLysGluAsnLeuProSerLeuCysS :   329
         ||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||
         heGluLysThrGlySerAlaIleThr***GlnCysLysGluAsnLeuProSerLeuCysS
 50217 : TTGAAAAAACAGGGTCTGCAATCACCTGACAGTGTAAAGAAAACCTCCCATCTTTATGTA : 50158

   330 : erUnkGlnGlyLeuArgAlaGluGluAsnIleThrGluSerCysGlnUnkArgLeuProP :   349
         ||   |||||||||  !||||||||||||||||||||||||||||||   ||||||||||
         er***GlnGlyLeuLeuAlaGluGluAsnIleThrGluSerCysGln***ArgLeuProP
 50157 : GCTGACAGGGACTTTTGGCAGAAGAGAACATAACTGAATCTTGTCAGTGACGTTTGCCTC : 50098

   350 : roAlaAlaUnkGlnIleSerGlnGlnLeuIleProThrGluAlaSerAlaSerUnkArgU :   369
         ||||||||   ||||||||||||||||||||||||||||||!.!|||.!!!:!   ||| 
         roAlaAla***GlnIleSerGlnGlnLeuIleProThrGluValSerThrAsn***Arg*
 50097 : CAGCTGCCTGACAAATAAGTCAGCAGCTTATACCCACAGAAGTCAGTACCAATTGACGCT : 50038

   370 : nkLysAsnGlnAlaLysLysUnkGluUnkProSerAsn :   381
           |||!:!:!!|||||||||   |||    !!||||||
         **LysSerLysAlaLysLys***Glu***SerSerAsn
 50037 : GAAAGAGTAAGGCAAAAAAGTGAGAATGATCTTCAAAC : 50000

vulgar: SPP00000082_2.0 0 381 . gi|511782589|gb|CM001944.1|:subseq(41494945,107633) 57633 49999 - 1757 M 67 201 S 0 2 5 0 2 I 0 1032 3 0 2 S 1 1 M 70 210 S 0 2 5 0 2 I 0 2112 3 0 2 S 1 1 M 39 117 5 0 2 I 0 3335 3 0 2 M 203 609
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	gene	50000	57633	1757	-	.	gene_id 1 ; sequence SPP00000082_2.0 ; gene_orientation +
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	cds	57431	57633	.	-	.	
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	exon	57431	57633	.	-	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice5	57429	57430	.	-	.	intron_id 1 ; splice_site "GT"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	intron	56395	57430	.	-	.	intron_id 1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice3	56395	56396	.	-	.	intron_id 0 ; splice_site "AG"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	cds	56182	56394	.	-	.	
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	exon	56182	56394	.	-	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice5	56180	56181	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	intron	54066	56181	.	-	.	intron_id 2
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice3	54066	54067	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	cds	53948	54065	.	-	.	
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	exon	53948	54065	.	-	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice5	53946	53947	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	intron	50609	53947	.	-	.	intron_id 3
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	splice3	50609	50610	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	cds	50000	50608	.	-	.	
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	exon	50000	50608	.	-	.	insertions 0 ; deletions 0
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	exonerate:protein2genome:local	similarity	50000	57633	1757	-	.	alignment_id 1 ; Query SPP00000082_2.0 ; Align 57634 1 201 ; Align 56394 69 210 ; Align 54065 140 117 ; Align 50609 179 609
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis