genewise output
Score 19.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000082_2.0  205 YHHEHHHNHGHQH                                     
                     Y H H H H H H                                     
                     YTHTHIHTHTHTH                                     
gi|511782589|gb69055 tacacacacacac                                     
                     acacatacacaca                                     
                     cacacacacatat                                     


//
>gi|511782589|gb|CM001944.1|:subseq(41494945,107633).pep
YTHTHIHTHTHTH
//
>gi|511782589|gb|CM001944.1|:subseq(41494945,107633).[69055:69093].sp
TACACACACACACACATACACACACACACACATACACAT
//
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	match	69055	69093	19.43	+	.	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	cds	69055	69093	0.00	+	0	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
//

genewise output
Score 623.29 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000082_2.0    1 MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSV 
                     MWRSLGLALALCLLPSGGTESQDQSS CKQPPAWSIRDQDPML+SNGSV 
                     MWRSLGLALALCLLPSGGTESQDQSSFCKQPPAWSIRDQDPMLDSNGSV 
gi|511782589|g-57633 ataacgcgcgctccctggagacgcatttacccgtaaagcgcacgtagtg 
                     tgggtgtctctgttccggcagaaagctgaacccggtgaaacttacagct 
                     ggatggtcgtctctagaaagcgcaccctgacacgcaatatagaccttag 


SPP00000082_2.0   50 TVVALLQASXYLCILQAS                          LEDLR 
                     TVVALLQASXYLCILQAS                          LEDLR 
                     TVVALLQASXYLCILQAS           K:K[aaa]       LEDLR 
gi|511782589|g-57486 agggcccgattctaccgtAAGTAAGAC  Intron 1   TAGAtggcc 
                     cttcttacggatgttacc  <2-----[57430:56395]-2> taatg 
                     tgctttaccacgcaggat                          gacga 


SPP00000082_2.0   74 VKLKKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD 
                     VKL+KEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD 
                     VKLEKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTD 
gi|511782589|g-56378 gacgaggttaattaggaccgattctataccaaagtgcacgtccggacag 
                     tataaagacatcatttaaagtccgtaacataaatcaatctaaaaaaaca 
                     aaggaaatttttttttttaacttaaacattgtgtagtttttaaaacaat 


SPP00000082_2.0  123 VWTLLNGSKDDFLIYD                          CGRLVYH 
                     VWTLLNGSKDDFLIYD                          CGRLVYH 
                     VWTLLNGSKDDFLIYD           R:R[aga]       CGRLVYH 
gi|511782589|g-56231 gtactagaaggtcatgAGGTTCGTA  Intron 2   TAGAtgccgtc 
                     tgcttaggaaatttaa  <2-----[56181:54066]-2> gggttaa 
                     cgttatacatcccatc                          tcttatt 


SPP00000082_2.0  147 LGLPFSFLTFPYVEEAIKIAYCEKKCGNCSLT                  
                     LGLPFSFLTF YVEEAIKI YCEKKCGNCSLT                  
                     LGLPFSFLTFSYVEEAIKIVYCEKKCGNCSLT                  
gi|511782589|g-54043 cgtctttcatttggggaaagttgaatgattca                  
                     tgtctcttctcataactattagaaaggagctc                  
                     ttgttccatcacaaactgttctagatacctcg                  


SPP00000082_2.0  179                        TLKDEDFCKRVSLATVDKTVETPSPH 
                                            TLKDEDFCK VSLATVD+ VE P PH 
                                            TLKDEDFCKSVSLATVDEAVEAPQPH 
gi|511782589|g-53947 GTATTTT  Intron 3   CAGacagggttaagttgagggggggcccc 
                     <0-----[53947:50609]-0>ctaaaatgagtctcctaactaccaca 
                                            tcatacttatatgttgtaatatagct 


SPP00000082_2.0  205 YHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQH 
                     YHHEHHHN GHQHLGSS+LSENQQPGAP+APTHPAPP LHHHHKHKGQH 
                     YHHEHHHNQGHQHLGSSKLSENQQPGAPDAPTHPAPPDLHHHHKHKGQH 
gi|511782589|g-50530 tccgcccacgccccgaaactgacccggcggcaccgccgcccccacagcc 
                     aaaaaaaaagaaatgggatcaaaacgccacccaccccataaaaaaagaa 
                     cttgttctgatgctcctgtagtgaaaaattttttttacttcctgcgtat 


SPP00000082_2.0  254 RQGHPENRDMPASEDLQDLQKKLCRKRCINQLLCKLPTDSELAPRSXCC 
                     RQGHPE+ DMP SE LQ LQKKL RKRCINQLLCKLP DSELAPRSXCC 
                     RQGHPESXDMPGSEGLQHLQKKLXRKRCINQLLCKLPKDSELAPRSXCC 
gi|511782589|g-50383 acgccgatgacgaggtccccaactcaataactctatcagtgcgcaattt 
                     gagacaggatcggagtaataaatggaggtaattgatcaacatccggggg 
                     ggtcagcatgaatataataaggcaagatataactagcataggttgcacc 


SPP00000082_2.0  303 HCRHLIFEKTGSAITXQCKENLPSLCSXQGLRAEENITESCQ        
                     HCRHLIFEKTGSAITXQCKENLPSLCSXQGL AEENITESCQ        
                     HCRHLIFEKTGSAITXQCKENLPSLCSXQGLLAEENITESCQ        
gi|511782589|g-50236 ctcccatgaagtgaatctagacctttatcgctgggaaagttc        
                     aggatttaacgcctcgagaaatcctgggagttcaaatcacga        
                     ctatgataaagtaccagtaaccatatcagatgaagcatattg        


//
Making a K in phase 2 intron
Making a R in phase 2 intron
>gi|511782589|gb|CM001944.1|:subseq(41494945,107633).pep
MWRSLGLALALCLLPSGGTESQDQSSFCKQPPAWSIRDQDPMLDSNGSVTVVALLQASXY
LCILQASKLEDLRVKLEKEGYSNISYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQ
TDVWTLLNGSKDDFLIYDRCGRLVYHLGLPFSFLTFSYVEEAIKIVYCEKKCGNCSLTTL
KDEDFCKSVSLATVDEAVEAPQPHYHHEHHHNQGHQHLGSSKLSENQQPGAPDAPTHPAP
PDLHHHHKHKGQHRQGHPESXDMPGSEGLQHLQKKLXRKRCINQLLCKLPKDSELAPRSX
CCHCRHLIFEKTGSAITXQCKENLPSLCSXQGLLAEENITESCQ
//
>gi|511782589|gb|CM001944.1|:subseq(41494945,107633).[57633:50109].sp
ATGTGGAGAAGTCTGGGGCTTGCCCTGGCTCTCTGTCTCCTTCCATCGGGAGGAACAGAG
AGCCAGGACCAAAGCTCCTTCTGTAAGCAACCCCCAGCCTGGAGCATAAGAGATCAAGAT
CCAATGCTAGACTCCAATGGTTCAGTGACTGTGGTCGCTCTTCTTCAAGCCAGCTGATAC
CTGTGCATACTGCAGGCATCTAAATTGGAAGACCTGCGAGTAAAACTGGAGAAAGAAGGA
TATTCTAATATTTCTTATATTGTTGTTAATCATCAAGGAATCTCTTCTCGATTAAAATAC
ACACATCTTAAGAATAAGGTTTCAGAGCATATTCCTGTTTATCAACAAGAAGAAAACCAA
ACAGATGTCTGGACTCTTTTAAATGGAAGCAAAGATGACTTCCTCATATATGACAGATGT
GGCCGTCTTGTATATCATCTTGGTTTGCCTTTTTCCTTCCTAACTTTCTCATACGTAGAA
GAAGCCATTAAGATTGTTTACTGTGAAAAGAAATGTGGAAACTGCTCTCTCACGACTCTC
AAAGATGAAGACTTTTGTAAAAGTGTATCTTTGGCTACTGTGGATGAAGCAGTTGAAGCT
CCACAGCCCCATTACCATCATGAGCATCATCACAATCAGGGACATCAGCACCTTGGCAGC
AGTAAGCTTTCAGAGAATCAGCAACCAGGAGCACCAGATGCTCCTACTCATCCTGCTCCT
CCAGACCTTCATCACCACCATAAGCACAAGGGTCAACATAGGCAGGGTCACCCAGAGAGC
TGAGATATGCCAGGAAGTGAAGGTTTACAACATCTACAAAAGAAGCTCTGACGAAAGAGA
TGTATAAATCAATTACTCTGTAAATTGCCCAAAGATTCAGAGCTGGCTCCTAGGAGCTGA
TGCTGCCACTGTCGACATCTGATATTTGAAAAAACAGGGTCTGCAATCACCTGACAGTGT
AAAGAAAACCTCCCATCTTTATGTAGCTGACAGGGACTTTTGGCAGAAGAGAACATAACT
GAATCTTGTCAG
//
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	match	57633	50111	623.29	-	.	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	cds	57633	57431	0.00	-	0	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	intron	57430	56395	0.00	-	.	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	cds	56394	56182	0.00	-	1	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	intron	56181	54066	0.00	-	.	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	cds	54065	53948	0.00	-	1	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	intron	53947	50609	0.00	-	.	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
gi|511782589|gb|CM001944.1|:subseq(41494945,107633)	GeneWise	cds	50608	50111	0.00	-	0	gi|511782589|gb|CM001944.1|:subseq(41494945,107633)-genewise-prediction-1
//