Output_id:  SelP.3.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782589|gb|CM001944.1|
-Program        genewise
-Query name     SelP__0 NP_001087195.1, [Se user]; [Homo sapiens (Eukaryota/Metazoa/Coelomata/Chordata/Mammals)]
-Query range    1-381      length:381   coverage: 1.0
-Profile range  240-693    length:693   coverage: 0.66    sec_positions: [309, 548, 569, 571, 572, 576, 580, 582, 587, 589, 603, 605, 607, 625, 626, 636, 638, 654, 655, 656, 657, 663, 665, 667, 679, 680, 681, 682, 688, 690]
-ASI:           0.4964     (ignoring gaps: 0.564)
-AWSIc:         0.82     Z-score: 1.038
-AWSIw:         0.8194     Z-score: 1.037
-State          kept

------- alignment -------
Query   MWRSLGLALALCLLPSGGTESQDQSSLCKQPPAWSIRDQDPMLNSNGSVTVVALLQASUYLCIIEASK <---Intron---> LEDLRVKLKKEGYSNI
        |||||||||||||||||||||||||| ||||||||||||||||/|||||||||||||||||||//||| <   1036nt   > ||||||||/|||||||
Target  MWRSLGLALALCLLPSGGTESQDQSSFCKQPPAWSIRDQDPMLDSNGSVTVVALLQASUYLCILQASK                LEDLRVKLEKEGYSNI
        ataacgcgcgctccctggagacgcatttacccgtaaagcgcacgtagtgagggcccgattctaccgta                tggccgacgaggttaa
        tgggtgtctctgttccggcagaaagctgaacccggtgaaacttacagctcttcttacggatgttacca   gt     ag    taatgtataaagacat
        ggatggtcgtctctagaaagcgcaccctgacacgcaatatagaccttagtgctttaccacgcaggat                agacgaaaggaaatttt
                                                                  *                                         

Query   SYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDR <---Intron---> CGRLVYHLGLPFSFLTFPYVEEAIKIAYC
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   2116nt   > ||||||||||||||||| |||||||| ||
Target  SYIVVNHQGISSRLKYTHLKNKVSEHIPVYQQEENQTDVWTLLNGSKDDFLIYDR                CGRLVYHLGLPFSFLTFSYVEEAIKIVYC
        ttaggaccgattctataccaaagtgcacgtccggacaggtactagaaggtcatga                tgccgtccgtctttcatttggggaaagtt
        catttaaagtccgtaacataaatcaatctaaaaaaacatgcttaggaaatttaag   gt     ag    gggttaatgtctcttctcataactattag
        tttttttaacttaaacattgtgtagtttttaaaacaatcgttatacatcccatc                atcttattttgttccatcacaaactgttct
                                                                                                            

Query   EKKCGNCSLT <---Intron---> TLKDEDFCKRVSLATVDKTVETPSPHYHHEHHHNHGHQHLGSSELSENQQPGAPNAPTHPAPPGLHHHHKHKGQ
        |||||||||| <   3339nt   > ||||||||| |||||||/ || | |||||||||| ||||||||/||||||||||/|||||||| ||||||||||
Target  EKKCGNCSLT                TLKDEDFCKSVSLATVDEAVEAPQPHYHHEHHHNQGHQHLGSSKLSENQQPGAPDAPTHPAPPDLHHHHKHKGQ
        gaatgattca                acagggttaagttgagggggggcccctccgcccacgccccgaaactgacccggcggcaccgccgcccccacagc
        aaaggagctc   gt     ag    ctaaaatgagtctcctaactaccacaaaaaaaaaagaaatgggatcaaaacgccacccaccccataaaaaaaga
        agatacctcg                tcatacttatatgttgtaatatagctcttgttctgatgctcctgtagtgaaaaattttttttacttcctgcgta
                                                                                                            

Query   HRQGHPENUDMPASEDLQDLQUKUURKRUIUQLLUKUPTDSELAPRSUCUHURHLIFEKTGSAITUUCKENLPSLUSUQGLRAEENITESUUUULPPAAU
        |||||||/|||| || || || | |||| | ||| | | |||||||||| | |||||||||||||| |||||||| ||||| ||||||||  | ||||||
Target  HRQGHPESUDMPGSEGLQHLQKKLURKRCINQLLCKLPKDSELAPRSUCCHCRHLIFEKTGSAITUQCKENLPSLCSUQGLLAEENITESCQURLPPAAU
        cacgccgatgacgaggtccccaactcaataactctatcagtgcgcaatttctcccatgaagtgaatctagacctttatcgctgggaaagttctctccggt
        agagacaggatcggagtaataaatggaggtaattgatcaacatccgggggaggatttaacgcctcgagaaatcctgggagttcaaatcacgaggtccccg
        tggtcagcatgaatataataaggcaagatataactagcataggttgcaccctatgataaagtaccagtaaccatatcagatgaagcatattgatgtatca
                *            * **   * *   * *          * * *             **        * *            ****     *

Query   UIUQQLIPTEASASUUUUNQAKKUEUPSN
         | ||||||| | /| | //|||||| ||
Target  QISQQLIPTEVSTNURUKSKAKKUEUSSN
        caacccacaggaaatctaaagaatgttta
        atgaattccatgcagggagacaagagcca
        aatggtacaactctacagtgaagaaatac
        * *           ****     * *   
------- positions -------
Exon 1    41552376     41552578
Exon 2    41551127     41551339
Exon 3    41548893     41549010
Exon 4    41544945     41545553

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *