Output_id:  SelO.1.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (+) gi|511782574|gb|CM001960.1|
-Program        genewise
-Query name     gi|32880229|ref|NP_113642.1| Human SelO, introduced manually in the profile. The protein originally hit in nr contained an additional stretch of aminoacids, which did not fit in the profile.
-Query range    1-669      length:669   coverage: 1.0
-Profile range  1-1108     length:1108  coverage: 1.0    sec_position: [1106]
-ASI:           0.3935     (ignoring gaps: 0.5068)
-AWSIc:         0.7946     Z-score: 1.154
-AWSIw:         0.7915     Z-score: 1.562
-State          kept

------- alignment -------
Query   MAVYRAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVALSE
        || |||||| ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||/||||||||||||||
Target  MAAYRAALGGSLAAARLLPLGRCHPSPAPGSTLSGAAMEPAPCWLAGLRFDNRALRALPVEAPPPGPEGAQSAPRPVPGACFTRVRPTPLRQPRLVALSE
        aggtaggcggtcgggcccccgctcctcgcgtattgggagcgcttcggcctgacgccgccgggcccgcgggctgcccgcggttacgccacccccccggctg
        tccagcctggctcccgttctgggacccccgcctcgcctacccggtcgtgtaagctgctctaccccgcagcacccgctcgcgtcgtgccctgacgttctca
        gcgcgttcgtgcgtcacgccccccggcgcctcggcccggcgtcgggggccccccgcggcggggtttcgccgcggcggcgcccccggccgggggctggggg
                                                                                                            

Query   PALALLGLGAPPAREAE--AEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSR <---Intron--
        |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| <   4140nt  
Target  PALALLGLGAPPAREAEAEAEAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFSR             
        cgcgccgcggccgcgggggggggcttagagcccgggcggctttgcctgctggccgggggattgggtagaggctgcccagggcactta             
        cctcttgtgccccgacacacacctttggacttcgcacccagaggaatgatcgatgagcctatgatgcccgaggatatagcgccctcg   gt     ag 
        cggaggcgcggcacgcgcgcgcggcccccgcggctgccgccccccgccgccgggcccccgcgcggcggccgcggagcgctgcgccc              
                                                                                                            

Query   -> QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFIR <---Intron---> FGSFEIFKSADEH
         > |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||/|||||| <   2054nt   > |||||||||||||
Target     QADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRIASTFIR                FGSFEIFKSADEH
           cgggcagcctaacgtctaggatccggcaacgggtgatgtaggcggttggacatgctaggtcagtataa                tgttgatatgggc
           acaggattgcgtgattggacttatgtcccgcgcgtccaccttgattaagacaaaagctttgtcccttg   gt     ag    tgctattaccaaa
          agcctcgcggaccggcgccacgccggcccagctctcgcgcgggccgcttttcataacgtggtatctca                gtactgttgcatgc
                                                                                                            

Query   TGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE <---Intron---> VTRRTARMVAEWQCVGFCHGVLNTDNMSILGLTIDYG
        |||||||||||||||||||||||||||||||||||| |||||||||| <   1424nt   > |||||| ||||||||||||||||||||||||||||||
Target  TGRAGPSVGRNDIRVQLLDYVISSFYPEIQAAHASDRVQRNAAFFRE                VTRRTAWMVAEWQCVGFCHGVLNTDNMSILGLTIDYG
        agcggcaggaagacgcccgtgaatttcgacggcgagcgcaaggttcg                gaccagtagggtctggttcggcaagaaaacgcaagtg
        cggcgcgtggaatgtattaattgctacataccacgagtagaccttga   gt     ag    tcggccgttcagagtgtgagttacaatgttgtctaag
        agtacccgggcctcgggtctcccctctgcgttcctccggacccccgg                gggcgggggcgggcgcccccgccctcgccggcccccg
                                                                                                            

Query   PFGFLDR <---Intron---> YDPDHVCNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDAEFQRHYLQKMRRKLGLVQVELE
        ||||||| <   288nt    > |||||||||||||||||||||||||/|||/|||||||||||||||||||||||||||||||/||||||||||//|||
Target  PFGFLDR                YDPDHVCNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDAEFQRHYMQKMRRKLGLVRLELE
        ctgtcga                tgcgcgtagtgaagctgtaaccggtataccacgggcccgcccgcgggacgggtgggtcactacaacaacgcgccgcg
        ctgttag   gt     ag    aacaatgaccaacggacagaacatgagataatcactacatctatgacttcaatacatagaataatggatgttgtata
        ccccgc                gcctccgctccccccccaccggcggcggcggggcgcggaggcgggcgccgcggttcgcagccggggcgggccgggggg
                                                                                                            

Query   EDGALVSKLLETMHLTG <---Intron---> ADFTNTFYLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR <---Intron---> Q
        || |||||||||||||| <   4653nt   > |||||||/|||||||||||||||||||||||||||||||||||||||||| <   752nt    > |
Target  EDKALVSKLLETMHLTG                ADFTNTFFLLSSFPVELESPGLAEFLARLMEQCASLEELRLAFRPQMDPR                Q
        ggagcgtaccgaaccag                ggtaaattccattcggcgtcgcggtcgacagctgtcggcacgtcccagcc                c
        aaacttcattactatc    gt     ag   gcatcacttttgctctataccgtcattcgttaagcctaatgtctgcatacg   gt     ag    a
        acggggcgcggcgcgc                ttccacctcggcccagggggacgggcgcggggatccggggggccgcggtc                gg
                                                                                                            

Query   LSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAELQSRNQGHWADWLQAYR <---Intron---> ARLDKDLEGAGDAAAWQAEHVRV
        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| <    89nt    > ||||||||||||||||||| |||
Target  LSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSMAELQSRNQGHWADWLQAYR                ARLDKDLEGAGDAAAWQAERVRV
        ctaacacgctaccctgcagacggagagcgcggcctccgccaaggccacacgctggtccgta                gccgagcggggggggtcggcgcg
        tctttttcacacattcttgcgcgtcgatagtaaacgtaatgtcataggaagagcagtacag   gt     ag    cgtaaatagcgacccgacagtgt
        acgggggagacgggcacgccgacccggagtggggtgggggcgagggcgcgccgtcgggat                acggcgcgaccgtttcggtgtgcg
                                                                                                            

Query   MHANNPKYVLRNYIAQNAIEAAERGDFSE <---Intron---> VRRVLKLLETPYHCEAGAATDAEATEADGADGRQRSYSSKPPLWAAELCVTUSS
        |||/||||||||||||||||||||||||| <    77nt    > ||||||||| ||||||||||| |||||/||| ||||||||||||||||||||||
Target  MHASNPKYVLRNYIAQNAIEAAERGDFSE                VRRVLKLLENPYHCEAGAATDPEATEANGADSRQRSYSSKPPLWAAELCVTUSS
        acgaacatgcaatagcagaggggcggttg                gccgcaccgactctgggggagcggaggagggaaccttaaaccctgggctgattt
        tacgacaattgaatcaactaccaggatca   gc     ag    tggttattaacaagacgcccacaccacagcaggagcaggacctgccatgtcgcc
        gcccccgcgggcccggcccgtcgcgccag                ggggggaggctcccgggtcatcgcggccggccggcccctgcgcgacagcgaatg
                                                                                                        *  
------- positions -------
Exon 1    32692954     32693513
Exon 2    32697654     32697857
Exon 3    32699912     32700092
Exon 4    32701517     32701647
Exon 5    32701936     32702216
Exon 6    32706870     32707020
Exon 7    32707773     32707958
Exon 8    32708048     32708204
Exon 9    32708282     32708443

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAA
 *