Command line: [exonerate -m p2g --showtargetgff -q SelO.fa.U_to_X -t gi|511782574|gb|CM001960.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000081_2.0 # Protein # Selenoprotein O (SelO) # Human (Homo sapiens) 
        Target: gi|511782574|gb|CM001960.1|:subseq(32647652,110791) Chlorocebus sabaeus isolate 1994-021 chromosome 19, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 3256
   Query range: 0 -> 669
  Target range: 45301 -> 60791

     1 : MetAlaValTyrArgAlaAlaLeuGlyAlaSerLeuAlaAlaAlaArgLeuLeuProLeu :    20
         ||||||!.!||||||||||||||||||!.!||||||||||||||||||||||||||||||
         MetAlaAlaTyrArgAlaAlaLeuGlyGlySerLeuAlaAlaAlaArgLeuLeuProLeu
 45302 : ATGGCCGCGTACAGGGCTGCTCTCGGGGGTTCGCTCGCGGCTGCCCGACTCCTGCCCCTC : 45359

    21 : GlyArgCysSerProSerProAlaProArgSerThrLeuSerGlyAlaAlaMetGluPro :    40
         |||||||||  !||||||||||||||| !!||||||||||||||||||||||||||||||
         GlyArgCysHisProSerProAlaProGlySerThrLeuSerGlyAlaAlaMetGluPro
 45360 : GGCCGCTGCCACCCGTCGCCCGCGCCCGGCTCTACCTTGTCGGGCGCCGCCATGGAGCCC : 45419

    41 : AlaProArgTrpLeuAlaGlyLeuArgPheAspAsnArgAlaLeuArgAlaLeuProVal :    60
         |||||| !!|||||||||||||||||||||||||||||||||||||||||||||||||||
         AlaProCysTrpLeuAlaGlyLeuArgPheAspAsnArgAlaLeuArgAlaLeuProVal
 45420 : GCGCCTTGCTGGCTGGCGGGGCTGCGCTTCGACAACCGCGCCCTGCGCGCGCTGCCCGTG : 45479

    61 : GluAlaProProProGlyProGluGlyAlaProSerAlaProArgProValProGlyAla :    80
         ||||||||||||||||||||||||||||||! !|||||||||||||||||||||||||||
         GluAlaProProProGlyProGluGlyAlaGlnSerAlaProArgProValProGlyAla
 45480 : GAGGCGCCGCCTCCTGGTCCCGAGGGCGCCCAGTCCGCGCCGCGCCCGGTGCCCGGGGCC : 45539

    81 : CysPheThrArgValGlnProThrProLeuArgGlnProArgLeuValAlaLeuSerGlu :   100
         |||||||||||||||!:!||||||||||||||||||||||||||||||||||||||||||
         CysPheThrArgValArgProThrProLeuArgGlnProArgLeuValAlaLeuSerGlu
 45540 : TGCTTCACCCGCGTGCGGCCCACCCCGCTGCGGCAGCCGCGCCTTGTGGCGCTGTCGGAG : 45599

   101 : ProAlaLeuAlaLeuLeuGlyLeuGlyAlaProProAlaArg<-><->GluAlaGluAla :   118
         ||||||||||||||||||||||||||||||||||||||||||      ||||||||||||
         ProAlaLeuAlaLeuLeuGlyLeuGlyAlaProProAlaArgGluAlaGluAlaGluAla
 45600 : CCCGCGCTGGCACTGCTGGGCCTGGGCGCGCCGCCCGCACGCGAGGCCGAGGCCGAGGCC : 45659

   119 : GluAlaAlaLeuPhePheSerGlyAsnAlaLeuLeuProGlyAlaGluProAlaAlaHis :   138
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluAlaAlaLeuPhePheSerGlyAsnAlaLeuLeuProGlyAlaGluProAlaAlaHis
 45660 : GAGGCCGCGCTGTTCTTCAGCGGCAACGCGCTCCTGCCGGGCGCTGAGCCCGCCGCGCAC : 45719

   139 : CysTyrCysGlyHisGlnPheGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMet :   158
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         CysTyrCysGlyHisGlnPheGlyGlnPheAlaGlyGlnLeuGlyAspGlyAlaAlaMet
 45720 : TGCTACTGCGGCCACCAGTTCGGCCAGTTCGCCGGGCAGCTGGGCGACGGCGCCGCCATG : 45779

   159 : TyrLeuGlyGluValCysThrAlaThrGlyGluArgTrpGluLeuGlnLeuLysGlyAla :   178
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         TyrLeuGlyGluValCysThrAlaThrGlyGluArgTrpGluLeuGlnLeuLysGlyAla
 45780 : TACTTGGGCGAGGTGTGCACGGCGACCGGCGAGCGCTGGGAGCTACAGCTCAAGGGCGCT : 45839

   179 : GlyProThrProPheSer{Ar}  >>>> Target Intron 1 >>>>  {g}GlnAla :   187
         ||||||||||||||||||{||}           4140 bp           {|}||||||
         GlyProThrProPheSer{Ar}++                         ++{g}GlnAla
 45840 : GGGCCCACGCCCTTCTCC{AG}gt.........................ag{A}CAGGCC : 50006

   188 : AspGlyArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPhe :   207
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspGlyArgLysValLeuArgSerSerIleArgGluPheLeuCysSerGluAlaMetPhe
 50007 : GACGGTCGCAAGGTCCTGCGGTCAAGCATCCGGGAGTTCCTGTGCAGCGAAGCCATGTTC : 50066

   208 : HisLeuGlyValProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValVal :   227
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         HisLeuGlyValProThrThrArgAlaGlyAlaCysValThrSerGluSerThrValVal
 50067 : CACCTGGGGGTCCCCACCACACGGGCCGGTGCCTGTGTCACGTCCGAGTCCACGGTGGTG : 50126

   228 : ArgAspValPheTyrAspGlyAsnProLysTyrGluGlnCysThrValValLeuArgVal :   247
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||:!!
         ArgAspValPheTyrAspGlyAsnProLysTyrGluGlnCysThrValValLeuArgIle
 50127 : CGCGACGTGTTCTATGATGGTAATCCCAAATATGAACAATGCACGGTTGTGTTGCGTATA : 50186

   248 : AlaSerThrPheIle{Ar}  >>>> Target Intron 2 >>>>  {g}PheGlySer :   256
         |||||||||||||||{||}           2054 bp           {|}|||||||||
         AlaSerThrPheIle{Ar}++                         ++{g}PheGlySer
 50187 : GCTTCCACTTTCATA{AG}gt.........................ag{G}TTTGGATCC : 52267

   257 : PheGluIlePheLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArg :   276
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheGluIlePheLysSerAlaAspGluHisThrGlyArgAlaGlyProSerValGlyArg
 52268 : TTTGAGATTTTTAAGTCCGCAGATGAGCACACAGGGCGTGCAGGCCCCAGCGTGGGGAGG : 52327

   277 : AsnAspIleArgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGln :   296
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnAspIleArgValGlnLeuLeuAspTyrValIleSerSerPheTyrProGluIleGln
 52328 : AACGACATTCGCGTGCAGCTGCTTGACTATGTCATCAGCTCCTTTTACCCTGAGATCCAG : 52387

   297 : AlaAlaHisAlaSerAspSerValGlnArgAsnAlaAlaPhePheArgGlu  >>>> Ta :   314
         |||||||||||||||||| !!||||||||||||||||||||||||||||||         
         AlaAlaHisAlaSerAspArgValGlnArgAsnAlaAlaPhePheArgGlu++       
 52388 : GCTGCTCACGCCAGTGACCGCGTGCAGAGAAACGCCGCCTTCTTCCGGGAGgt....... : 52443

   315 : rget Intron 3 >>>>  ValThrArgArgThrAlaArgMetValAlaGluTrpGlnC :   327
           1424 bp           |||||||||||||||||| !!|||||||||||||||||||
                           ++ValThrArgArgThrAlaTrpMetValAlaGluTrpGlnC
 52444 : ..................agGTGACGCGGCGCACGGCGTGGATGGTGGCCGAGTGGCAGT : 53904

   328 : ysValGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrI :   347
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ysValGlyPheCysHisGlyValLeuAsnThrAspAsnMetSerIleLeuGlyLeuThrI
 53905 : GCGTGGGCTTCTGCCACGGCGTGCTCAACACCGATAACATGAGCATCCTGGGGCTCACCA : 53964

   348 : leAspTyrGlyProPheGlyPheLeuAsp{Ar}  >>>> Target Intron 4 >>>> :   357
         |||||||||||||||||||||||||||||{||}            288 bp         
         leAspTyrGlyProPheGlyPheLeuAsp{Ar}++                         
 53965 : TCGACTACGGGCCCTTCGGCTTCCTGGAC{AG}gt......................... : 53998

   358 :   {g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaTyrS :   376
           {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ++{g}TyrAspProAspHisValCysAsnAlaSerAspAsnThrGlyArgTyrAlaTyrS
 53999 : ag{G}TACGACCCTGACCACGTGTGCAATGCCTCCGACAACACCGGCCGCTACGCATACA : 54339

   377 : erLysGlnProGluValCysArgTrpAsnLeuArgLysLeuAlaGluAlaLeuGlnProG :   396
         ||||||||||||||||||||!:!|||||||||!:!|||||||||||||||||||||||||
         erLysGlnProGluValCysLysTrpAsnLeuGlnLysLeuAlaGluAlaLeuGlnProG
 54340 : GCAAGCAGCCCGAGGTGTGCAAGTGGAACCTGCAGAAGCTGGCCGAGGCCCTGCAGCCAG : 54399

   397 : luLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGluPheGlnA :   416
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         luLeuProLeuGluLeuGlyGluAlaIleLeuAlaGluGluPheAspAlaGluPheGlnA
 54400 : AGCTGCCCCTGGAGCTGGGCGAGGCCATCCTGGCCGAGGAGTTTGATGCCGAGTTCCAAA : 54459

   417 : rgHisTyrLeuGlnLysMetArgArgLysLeuGlyLeuValGlnValGluLeuGluGluA :   436
         ||||||||:!!||||||||||||||||||||||||||||||!:!:!!|||||||||||||
         rgHisTyrMetGlnLysMetArgArgLysLeuGlyLeuValArgLeuGluLeuGluGluA
 54460 : GGCACTACATGCAGAAGATGCGCAGGAAGCTGGGCCTCGTGCGGCTGGAGCTGGAGGAAG : 54519

   437 : spGlyAlaLeuValSerLysLeuLeuGluThrMetHisLeuThr{G}  >>>> Target :   451
         ||  !|||||||||||||||||||||||||||||||||||||||{|}           46
         spLysAlaLeuValSerLysLeuLeuGluThrMetHisLeuThr{G}++           
 54520 : ACAAGGCGCTGGTGTCCAAGCTCCTGGAGACCATGCACCTGACC{G}gt........... : 54567

   452 :  Intron 5 >>>>  {ly}AlaAspPheThrAsnThrPheTyrLeuLeuSerSerPheP :   465
         53 bp           {||}|||||||||||||||||||||!:!||||||||||||||||
                       ++{ly}AlaAspPheThrAsnThrPhePheLeuLeuSerSerPheP
 54568 : ..............ag{GT}GCTGACTTCACAAACACCTTTTTCCTGCTGAGCTCCTTCC : 59259

   466 : roValGluLeuGluSerProGlyLeuAlaGluPheLeuAlaArgLeuMetGluGlnCysA :   485
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roValGluLeuGluSerProGlyLeuAlaGluPheLeuAlaArgLeuMetGluGlnCysA
 59260 : CAGTGGAGCTGGAGTCGCCAGGCCTGGCGGAGTTCCTGGCCAGGCTGATGGAGCAATGTG : 59319

   486 : laSerLeuGluGluLeuArgLeuAlaPheArgProGlnMetAspPro{Ar}  >>>> Ta :   501
         |||||||||||||||||||||||||||||||||||||||||||||||{||}         
         laSerLeuGluGluLeuArgLeuAlaPheArgProGlnMetAspPro{Ar}++       
 59320 : CCTCCCTGGAGGAGCTGAGGCTGGCCTTCCGGCCCCAGATGGATCCC{CG}gt....... : 59371

   502 : rget Intron 6 >>>>  {g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnP :   514
            752 bp           {|}|||||||||||||||||||||||||||||||||||||
                           ++{g}GlnLeuSerMetMetLeuMetLeuAlaGlnSerAsnP
 59372 : ..................ag{G}CAGCTATCCATGATGCTGATGCTGGCACAGTCAAACC : 60158

   515 : roGlnLeuPheAlaLeuMetGlyThrArgAlaGlyIleAlaArgGluLeuGluArgValG :   534
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         roGlnLeuPheAlaLeuMetGlyThrArgAlaGlyIleAlaArgGluLeuGluArgValG
 60159 : CGCAGCTGTTCGCACTCATGGGCACCCGGGCAGGCATCGCCAGGGAGCTAGAGCGTGTGG : 60218

   535 : luGlnGlnSerArgLeuGluGlnLeuSerAlaAlaGluLeuGlnSerArgAsnGlnGlyH :   554
         |||||||||||||||||||||||||||||  !||||||||||||||||||||||||||||
         luGlnGlnSerArgLeuGluGlnLeuSerMetAlaGluLeuGlnSerArgAsnGlnGlyH
 60219 : AGCAGCAGTCTCGGCTGGAGCAGCTGAGCATGGCAGAGCTGCAGAGCCGGAACCAGGGCC : 60278

   555 : isTrpAlaAspTrpLeuGlnAlaTyr{Ar}  >>>> Target Intron 7 >>>>  { :   563
         ||||||||||||||||||||||||||{||}            89 bp            {
         isTrpAlaAspTrpLeuGlnAlaTyr{Ar}++                         ++{
 60279 : ACTGGGCTGACTGGCTGCAGGCATAT{AG}gt.........................ag{ : 60396

   564 : g}AlaArgLeuAspLysAspLeuGluGlyAlaGlyAspAlaAlaAlaTrpGlnAlaGluH :   583
         |}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||!
         g}AlaArgLeuAspLysAspLeuGluGlyAlaGlyAspAlaAlaAlaTrpGlnAlaGluA
 60397 : A}GCCCGGCTGGACAAGGACCTGGAAGGCGCCGGGGATGCTGCTGCCTGGCAGGCTGAGC : 60454

   584 : isValArgValMetHisAlaAsnAsnProLysTyrValLeuArgAsnTyrIleAlaGlnA :   603
         .!||||||||||||||||||!:!|||||||||||||||||||||||||||||||||||||
         rgValArgValMetHisAlaSerAsnProLysTyrValLeuArgAsnTyrIleAlaGlnA
 60455 : GTGTGCGCGTGATGCACGCCAGCAACCCCAAGTACGTGCTGAGGAACTACATCGCGCAGA : 60514

   604 : snAlaIleGluAlaAlaGluArgGlyAspPheSerGlu  >>>> Target Intron 8 :   616
         ||||||||||||||||||||||||||||||||||||||            77 bp     
         snAlaIleGluAlaAlaGluArgGlyAspPheSerGlu+-                    
 60515 : ACGCCATCGAGGCTGCCGAGCGCGGGGACTTCTCAGAGgc.................... : 60555

   617 :  >>>>  ValArgArgValLeuLysLeuLeuGluThrProTyrHisCysGluAlaGlyAl :   633
                |||||||||||||||||||||||||||!.!|||||||||||||||||||||||
              ++ValArgArgValLeuLysLeuLeuGluAsnProTyrHisCysGluAlaGlyAl
 60556 : .....agGTGCGGCGGGTGCTGAAGCTACTGGAGAACCCTTACCACTGCGAGGCGGGGGC : 60681

   634 : aAlaThrAspAlaGluAlaThrGluAlaAspGlyAlaAspGlyArgGlnArgSerTyrSe :   653
         |||||||||| !!|||||||||||||||:!!|||||||||.!!|||||||||||||||||
         aAlaThrAspProGluAlaThrGluAlaAsnGlyAlaAspSerArgGlnArgSerTyrSe
 60682 : TGCCACAGATCCCGAGGCCACGGAGGCCAACGGGGCGGACAGCAGGCAGCGCTCCTACAG : 60741

   654 : rSerLysProProLeuTrpAlaAlaGluLeuCysValThrUnkSerSer :   669
         ||||||||||||||||||||||||||||||||||||||||   ||||||
         rSerLysProProLeuTrpAlaAlaGluLeuCysValThr***SerSer
 60742 : CAGTAAGCCCCCGCTCTGGGCAGCCGAACTGTGCGTGACATGATCTTCG : 60791

vulgar: SPP00000081_2.0 0 669 . gi|511782574|gb|CM001960.1|:subseq(32647652,110791) 45301 60791 + 3256 M 114 342 G 0 6 M 70 210 S 0 2 5 0 2 I 0 4136 3 0 2 S 1 1 M 67 201 S 0 2 5 0 2 I 0 2050 3 0 2 S 1 1 M 60 180 5 0 2 I 0 1420 3 0 2 M 43 129 S 0 2 5 0 2 I 0 284 3 0 2 S 1 1 M 93 279 S 0 1 5 0 2 I 0 4649 3 0 2 S 1 2 M 49 147 S 0 2 5 0 2 I 0 748 3 0 2 S 1 1 M 61 183 S 0 2 5 0 2 I 0 85 3 0 2 S 1 1 M 52 156 5 0 2 I 0 73 3 0 2 M 54 162
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-04
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	gene	45302	60791	3256	+	.	gene_id 1 ; sequence SPP00000081_2.0 ; gene_orientation +
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	45302	45861	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	45302	45861	.	+	.	insertions 6 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	45862	45863	.	+	.	intron_id 1 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	45862	50001	.	+	.	intron_id 1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	50000	50001	.	+	.	intron_id 0 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	50002	50205	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	50002	50205	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	50206	50207	.	+	.	intron_id 2 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	50206	52259	.	+	.	intron_id 2
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	52258	52259	.	+	.	intron_id 1 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	52260	52440	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	52260	52440	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	52441	52442	.	+	.	intron_id 3 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	52441	53864	.	+	.	intron_id 3
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	53863	53864	.	+	.	intron_id 2 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	53865	53995	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	53865	53995	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	53996	53997	.	+	.	intron_id 4 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	53996	54283	.	+	.	intron_id 4
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	54282	54283	.	+	.	intron_id 3 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	54284	54564	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	54284	54564	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	54565	54566	.	+	.	intron_id 5 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	54565	59217	.	+	.	intron_id 5
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	59216	59217	.	+	.	intron_id 4 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	59218	59368	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	59218	59368	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	59369	59370	.	+	.	intron_id 6 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	59369	60120	.	+	.	intron_id 6
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	60119	60120	.	+	.	intron_id 5 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	60121	60306	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	60121	60306	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	60307	60308	.	+	.	intron_id 7 ; splice_site "GT"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	60307	60395	.	+	.	intron_id 7
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	60394	60395	.	+	.	intron_id 6 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	60396	60552	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	60396	60552	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice5	60553	60554	.	+	.	intron_id 8 ; splice_site "GC"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	intron	60553	60629	.	+	.	intron_id 8
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	splice3	60628	60629	.	+	.	intron_id 7 ; splice_site "AG"
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	cds	60630	60791	.	+	.	
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	exon	60630	60791	.	+	.	insertions 0 ; deletions 0
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	exonerate:protein2genome:local	similarity	45302	60791	3256	+	.	alignment_id 1 ; Query SPP00000081_2.0 ; Align 45302 1 342 ; Align 45650 115 210 ; Align 50003 186 201 ; Align 52261 254 180 ; Align 53865 314 129 ; Align 54285 358 279 ; Align 59220 452 147 ; Align 60122 502 183 ; Align 60397 564 156 ; Align 60630 616 162
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis