genewise output
Score 1428.54 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_2.0    1 MAVYRAALGASLAAARLLPLGRCSPSPAPRSTLSGAAMEPAPRWLAGLR 
                     MA YRAALG SLAAARLLPLGRC PSPAP STLSGAAMEPAP WLAGLR 
                     MAAYRAALGGSLAAARLLPLGRCHPSPAPGSTLSGAAMEPAPCWLAGLR 
gi|511782574|gb45302 aggtaggcggtcgggcccccgctcctcgcgtattgggagcgcttcggcc 
                     tccagcctggctcccgttctgggacccccgcctcgcctacccggtcgtg 
                     gcgcgttcgtgcgtcacgccccccggcgcctcggcccggcgtcgggggc 


SPP00000081_2.0   50 FDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLVAL 
                     FDNRALRALPVEAPPPGPEGA SAPRPVPGACFTRV+PTPLRQPRLVAL 
                     FDNRALRALPVEAPPPGPEGAQSAPRPVPGACFTRVRPTPLRQPRLVAL 
gi|511782574|gb45449 tgacgccgccgggcccgcgggctgcccgcggttacgccacccccccggc 
                     taagctgctctaccccgcagcacccgctcgcgtcgtgccctgacgttct 
                     cccccgcggcggggtttcgccgcggcggcgcccccggccgggggctggg 


SPP00000081_2.0   99 SEPALALLGLGAPPAREAE--AEAALFFSGNALLPGAEPAAHCYCGHQF 
                     SEPALALLGLGAPPAREAE  AEAALFFSGNALLPGAEPAAHCYCGHQF 
                     SEPALALLGLGAPPAREAEAEAEAALFFSGNALLPGAEPAAHCYCGHQF 
gi|511782574|gb45596 tgcgcgccgcggccgcgggggggggcttagagcccgggcggctttgcct 
                     cacctcttgtgccccgacacacacctttggacttcgcacccagaggaat 
                     ggcggaggcgcggcacgcgcgcgcggcccccgcggctgccgccccccgc 


SPP00000081_2.0  146 GQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS           
                     GQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS           
                     GQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS           
gi|511782574|gb45743 gctggccgggggattgggtagaggctgcccagggcactt           
                     gatcgatgagcctatgatgcccgaggatatagcgccctc           
                     cgccgggcccccgcgcggcggccgcggagcgctgcgccc           


SPP00000081_2.0  185                           QADGRKVLRSSIREFLCSEAMFH 
                                               QADGRKVLRSSIREFLCSEAMFH 
                                R:R[aga]       QADGRKVLRSSIREFLCSEAMFH 
gi|511782574|gb45860 AGGTGGGCC  Intron 1   CAGAcgggcagcctaacgtctaggatc 
                       <2-----[45862:50001]-2> acaggattgcgtgattggactta 
                                               gcctcgcggaccggcgccacgcc 


SPP00000081_2.0  209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI      
                     LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLR+ASTFI      
                     LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRIASTFI      
gi|511782574|gb50072 cggcaacgggtgatgtaggcggttggacatgctaggtcagtata      
                     tgtcccgcgcgtccaccttgattaagacaaaagctttgtccctt      
                     ggcccagctctcgcgcgggccgcttttcataacgtggtatctca      


SPP00000081_2.0  253                           FGSFEIFKSADEHTGRAGPSVGR 
                                               FGSFEIFKSADEHTGRAGPSVGR 
                                R:R[agg]       FGSFEIFKSADEHTGRAGPSVGR 
gi|511782574|gb50204 AGGTAATGC  Intron 2   CAGGtgttgatatgggcagcggcagga 
                       <2-----[50206:52259]-2> tgctattaccaaacggcgcgtgg 
                                               tactgttgcatgcagtacccggg 


SPP00000081_2.0  277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE             
                     NDIRVQLLDYVISSFYPEIQAAHASD VQRNAAFFRE             
                     NDIRVQLLDYVISSFYPEIQAAHASDRVQRNAAFFRE             
gi|511782574|gb52330 agacgcccgtgaatttcgacggcgagcgcaaggttcg             
                     aatgtattaattgctacataccacgagtagaccttga             
                     cctcgggtctcccctctgcgttcctccggacccccgg             


SPP00000081_2.0  314                        VTRRTARMVAEWQCVGFCHGVLNTDN 
                                            VTRRTA MVAEWQCVGFCHGVLNTDN 
                                            VTRRTAWMVAEWQCVGFCHGVLNTDN 
gi|511782574|gb52441 GTCAGTG  Intron 3   CAGgaccagtagggtctggttcggcaaga 
                     <0-----[52441:53864]-0>tcggccgttcagagtgtgagttacaa 
                                            gggcgggggcgggcgcccccgccctc 


SPP00000081_2.0  340 MSILGLTIDYGPFGFLD                          YDPDHV 
                     MSILGLTIDYGPFGFLD                          YDPDHV 
                     MSILGLTIDYGPFGFLD           R:R[agg]       YDPDHV 
gi|511782574|gb53943 aaacgcaagtgctgtcgAGGTAAGTG  Intron 4   CAGGtgcgcg 
                     tgttgtctaagctgtta  <2-----[53996:54283]-2> aacaat 
                     gccggcccccgccccgc                          cctccg 


SPP00000081_2.0  364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA 
                     CNASDNTGRYAYSKQPEVC+WNL+KLAEALQPELPLELGEAILAEEFDA 
                     CNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDA 
gi|511782574|gb54303 tagtgaagctgtaaccggtataccacgggcccgcccgcgggacgggtgg 
                     gaccaacggacagaacatgagataatcactacatctatgacttcaatac 
                     ctccccccccaccggcggcggcggggcgcggaggcgggcgccgcggttc 


SPP00000081_2.0  413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT            
                     EFQRHY+QKMRRKLGLV++ELEED ALVSKLLETMHLT            
                     EFQRHYMQKMRRKLGLVRLELEEDKALVSKLLETMHLT            
gi|511782574|gb54450 gtcactacaacaacgcgccgcgggagcgtaccgaacca            
                     atagaataatggatgttgtataaaacttcattactatc            
                     gcagccggggcgggccggggggacggggcgcggcgcgc            


SPP00000081_2.0  451                           ADFTNTFYLLSSFPVELESPGLA 
                                               ADFTNTF+LLSSFPVELESPGLA 
                               G:G[ggt]        ADFTNTFFLLSSFPVELESPGLA 
gi|511782574|gb54564 GGTGAGTG  Intron 5   CAGGTggtaaattccattcggcgtcgcg 
                      <1-----[54565:59217]-1>  catcacttttgctctataccgtc 
                                               tccacctcggcccagggggacgg 


SPP00000081_2.0  475 EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFLARLMEQCASLEELRLAFRPQMDP                        
                     EFLARLMEQCASLEELRLAFRPQMDP           R:R[cgg]     
gi|511782574|gb59289 gtcgacagctgtcggcacgtcccagcCGGTGGGTA  Intron 6     
                     attcgttaagcctaatgtctgcatac  <2-----[59369:60120]  
                     gcgcggggatccggggggccgcggtc                        


SPP00000081_2.0  501     QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE 
                         QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLS AE 
                         QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSMAE 
gi|511782574|gb60118 CAGGcctaacacgctaccctgcagacggagagcgcggcctccgccaagg 
                     -2> atctttttcacacattcttgcgcgtcgatagtaaacgtaatgtca 
                         gacgggggagacgggcacgccgacccggagtggggtgggggcgag 


SPP00000081_2.0  547 LQSRNQGHWADWLQAY                          ARLDKDL 
                     LQSRNQGHWADWLQAY                          ARLDKDL 
                     LQSRNQGHWADWLQAY           R:R[aga]       ARLDKDL 
gi|511782574|gb60257 ccacacgctggtccgtAGGTGAGCC  Intron 7   CAGAgccgagc 
                     taggaagagcagtaca  <2-----[60307:60395]-2> cgtaaat 
                     ggcgcgccgtcgggat                          cggcgcg 


SPP00000081_2.0  571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE     
                     EGAGDAAAWQAE VRVMHA+NPKYVLRNYIAQNAIEAAERGDFSE     
                     EGAGDAAAWQAERVRVMHASNPKYVLRNYIAQNAIEAAERGDFSE     
gi|511782574|gb60418 ggggggggtcggcgcgacgaacatgcaatagcagaggggcggttg     
                     agcgacccgacagtgttacgacaattgaatcaactaccaggatca     
                     accgtttcggtgtgcggcccccgcgggcccggcccgtcgcgccag     


SPP00000081_2.0  616                        VRRVLKLLETPYHCEAGAATDAEATE 
                                            VRRVLKLLE PYHCEAGAATD EATE 
                                            VRRVLKLLENPYHCEAGAATDPEATE 
gi|511782574|gb60553 GCAAGCA  Intron 8   CAGgccgcaccgactctgggggagcggag 
                     <0-----[60553:60629]-0>tggttattaacaagacgcccacacca 
                                            ggggggaggctcccgggtcatcgcgg 


SPP00000081_2.0  642 ADGADGRQRSYSSKPPLWAAELCVT                         
                     A+GAD RQRSYSSKPPLWAAELCVT                         
                     ANGADSRQRSYSSKPPLWAAELCVT                         
gi|511782574|gb60708 gagggaaccttaaaccctgggctga                         
                     cagcaggagcaggacctgccatgtc                         
                     ccggccggcccctgcgcgacagcga                         


//
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
>gi|511782574|gb|CM001960.1|:subseq(32647652,110791).pep
MAAYRAALGGSLAAARLLPLGRCHPSPAPGSTLSGAAMEPAPCWLAGLRFDNRALRALPV
EAPPPGPEGAQSAPRPVPGACFTRVRPTPLRQPRLVALSEPALALLGLGAPPAREAEAEA
EAALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGA
GPTPFSRQADGRKVLRSSIREFLCSEAMFHLGVPTTRAGACVTSESTVVRDVFYDGNPKY
EQCTVVLRIASTFIRFGSFEIFKSADEHTGRAGPSVGRNDIRVQLLDYVISSFYPEIQAA
HASDRVQRNAAFFREVTRRTAWMVAEWQCVGFCHGVLNTDNMSILGLTIDYGPFGFLDRY
DPDHVCNASDNTGRYAYSKQPEVCKWNLQKLAEALQPELPLELGEAILAEEFDAEFQRHY
MQKMRRKLGLVRLELEEDKALVSKLLETMHLTGADFTNTFFLLSSFPVELESPGLAEFLA
RLMEQCASLEELRLAFRPQMDPRQLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSR
LEQLSMAELQSRNQGHWADWLQAYRARLDKDLEGAGDAAAWQAERVRVMHASNPKYVLRN
YIAQNAIEAAERGDFSEVRRVLKLLENPYHCEAGAATDPEATEANGADSRQRSYSSKPPL
WAAELCVT
//
>gi|511782574|gb|CM001960.1|:subseq(32647652,110791).[45302:60782].sp
ATGGCCGCGTACAGGGCTGCTCTCGGGGGTTCGCTCGCGGCTGCCCGACTCCTGCCCCTC
GGCCGCTGCCACCCGTCGCCCGCGCCCGGCTCTACCTTGTCGGGCGCCGCCATGGAGCCC
GCGCCTTGCTGGCTGGCGGGGCTGCGCTTCGACAACCGCGCCCTGCGCGCGCTGCCCGTG
GAGGCGCCGCCTCCTGGTCCCGAGGGCGCCCAGTCCGCGCCGCGCCCGGTGCCCGGGGCC
TGCTTCACCCGCGTGCGGCCCACCCCGCTGCGGCAGCCGCGCCTTGTGGCGCTGTCGGAG
CCCGCGCTGGCACTGCTGGGCCTGGGCGCGCCGCCCGCACGCGAGGCCGAGGCCGAGGCC
GAGGCCGCGCTGTTCTTCAGCGGCAACGCGCTCCTGCCGGGCGCTGAGCCCGCCGCGCAC
TGCTACTGCGGCCACCAGTTCGGCCAGTTCGCCGGGCAGCTGGGCGACGGCGCCGCCATG
TACTTGGGCGAGGTGTGCACGGCGACCGGCGAGCGCTGGGAGCTACAGCTCAAGGGCGCT
GGGCCCACGCCCTTCTCCAGACAGGCCGACGGTCGCAAGGTCCTGCGGTCAAGCATCCGG
GAGTTCCTGTGCAGCGAAGCCATGTTCCACCTGGGGGTCCCCACCACACGGGCCGGTGCC
TGTGTCACGTCCGAGTCCACGGTGGTGCGCGACGTGTTCTATGATGGTAATCCCAAATAT
GAACAATGCACGGTTGTGTTGCGTATAGCTTCCACTTTCATAAGGTTTGGATCCTTTGAG
ATTTTTAAGTCCGCAGATGAGCACACAGGGCGTGCAGGCCCCAGCGTGGGGAGGAACGAC
ATTCGCGTGCAGCTGCTTGACTATGTCATCAGCTCCTTTTACCCTGAGATCCAGGCTGCT
CACGCCAGTGACCGCGTGCAGAGAAACGCCGCCTTCTTCCGGGAGGTGACGCGGCGCACG
GCGTGGATGGTGGCCGAGTGGCAGTGCGTGGGCTTCTGCCACGGCGTGCTCAACACCGAT
AACATGAGCATCCTGGGGCTCACCATCGACTACGGGCCCTTCGGCTTCCTGGACAGGTAC
GACCCTGACCACGTGTGCAATGCCTCCGACAACACCGGCCGCTACGCATACAGCAAGCAG
CCCGAGGTGTGCAAGTGGAACCTGCAGAAGCTGGCCGAGGCCCTGCAGCCAGAGCTGCCC
CTGGAGCTGGGCGAGGCCATCCTGGCCGAGGAGTTTGATGCCGAGTTCCAAAGGCACTAC
ATGCAGAAGATGCGCAGGAAGCTGGGCCTCGTGCGGCTGGAGCTGGAGGAAGACAAGGCG
CTGGTGTCCAAGCTCCTGGAGACCATGCACCTGACCGGTGCTGACTTCACAAACACCTTT
TTCCTGCTGAGCTCCTTCCCAGTGGAGCTGGAGTCGCCAGGCCTGGCGGAGTTCCTGGCC
AGGCTGATGGAGCAATGTGCCTCCCTGGAGGAGCTGAGGCTGGCCTTCCGGCCCCAGATG
GATCCCCGGCAGCTATCCATGATGCTGATGCTGGCACAGTCAAACCCGCAGCTGTTCGCA
CTCATGGGCACCCGGGCAGGCATCGCCAGGGAGCTAGAGCGTGTGGAGCAGCAGTCTCGG
CTGGAGCAGCTGAGCATGGCAGAGCTGCAGAGCCGGAACCAGGGCCACTGGGCTGACTGG
CTGCAGGCATATAGAGCCCGGCTGGACAAGGACCTGGAAGGCGCCGGGGATGCTGCTGCC
TGGCAGGCTGAGCGTGTGCGCGTGATGCACGCCAGCAACCCCAAGTACGTGCTGAGGAAC
TACATCGCGCAGAACGCCATCGAGGCTGCCGAGCGCGGGGACTTCTCAGAGGTGCGGCGG
GTGCTGAAGCTACTGGAGAACCCTTACCACTGCGAGGCGGGGGCTGCCACAGATCCCGAG
GCCACGGAGGCCAACGGGGCGGACAGCAGGCAGCGCTCCTACAGCAGTAAGCCCCCGCTC
TGGGCAGCCGAACTGTGCGTGACA
//
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	match	45302	60782	1429.54	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	45302	45861	0.00	+	0	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	45862	50001	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	50002	50205	0.00	+	1	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	50206	52259	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	52260	52440	0.00	+	1	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	52441	53864	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	53865	53995	0.00	+	0	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	53996	54283	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	54284	54564	0.00	+	1	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	54565	59217	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	59218	59368	0.00	+	2	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	59369	60120	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	60121	60306	0.00	+	1	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	60307	60395	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	60396	60552	0.00	+	1	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	intron	60553	60629	0.00	+	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	60630	60782	0.00	+	0	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
//

genewise output
Score 28.20 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000081_2.0   42 PRWLAGLRFDNRALRALPVEAPPPGPEGAPSAPRPVPGA           
                     PR  AGL    R  + LP   PPP    AP+APR  PG+           
                     PRRTAGLFAQPRTQKGLPRPGPPP----APAAPRCGPGS           
gi|511782574|g-11266 cccaggctgccaacagccccgccc    gcggcctgcga           
                     cggccgttcacgcaagtcgcgccc    cccccgggcgg           
                     ccccagcccgcgggggttcgacat    cgcgcttgcac           


//
>gi|511782574|gb|CM001960.1|:subseq(32647652,110791).pep
PRRTAGLFAQPRTQKGLPRPGPPPAPAAPRCGPGS
//
>gi|511782574|gb|CM001960.1|:subseq(32647652,110791).[11266:11160].sp
CCCCGCCGCACCGCAGGGCTCTTCGCCCAGCCCAGGACGCAGAAGGGGCTTCCTCGCCCG
GGACCCCCACCTGCCCCGGCCGCGCCCCGTTGTGGGCCCGGAAGC
//
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	match	11266	11162	31.19	-	.	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
gi|511782574|gb|CM001960.1|:subseq(32647652,110791)	GeneWise	cds	11266	11162	0.00	-	0	gi|511782574|gb|CM001960.1|:subseq(32647652,110791)-genewise-prediction-1
//