Output_id:  SelN.8.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782573|gb|CM001961.1|
-Program        genewise
-Query name     gi|169234640|ref|NP_001108444.1| selenoprotein N, 1 [Gallus gallus]
-Query range    35-529     length:530   coverage: 0.93
-Profile range  72-568     length:569   coverage: 0.87    sec_position: [441]
-ASI:           0.6909     (ignoring gaps: 0.7902)
-AWSIc:         0.8493     Z-score: 1.027
-AWSIw:         0.8878     Z-score: 1.445
-State          kept

------- alignment -------
Query   QQELALKSLGSEGLFLFSSLDTNNDLYLSPEEFKPIAEKLTG <---Intron---> VTPVSDFEED--APDPNGETLSIVAKFQPLVMETMTKSKDGF
        /|| |||/||//||||||||| / |/|/|||||||||||||| <   5181nt   >  || / /||/   |||/ |||/| |/||||/ ||||||||||
Target  KQESALKTLGTDGLFLFSSLDIDGDMYISPEEFKPIAEKLTG                STPAASYEEEELPPDPSEETLTIEARFQPLLPETMTKSKDGF
        acgtgcaacgaggctcttttgagggataacggtacaggacag                tacggatggggtccgcaggacaaggctcccccgaaaaaaggt
        aaacctactgcagttttcctatagatatgcaatactcaatc    gt     ag   gcccccgaaaaatccacgaactctacgtacttcactcagaagt
        ggaagggcggatcttctccgctcgtgccctggcacttggaa                gattgcccgggggctctcggaccaacacgtgcggcgcacatcc
                                                                                                            

Query   LG <---Intron---> ISHVALSGLRNWTAPVSPKSVMLARQFKAFLPPKNKLDLGDPWWIIPSELNIFTGYLSNNRFYPPPPKGKE <---Intron
        || <   3211nt   > /| /||||||||||  || /|  || |/ ||||  / /||/|||||||||//||||||||||||||||||| <   235nt 
Target  LG                VSRLALSGLRNWTAAASPSAVFSARHFQPFLPPPGQ-ELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKE           
        cg                gtccgctgccatagggtcaggttgcctcctccccgc-gcggcttaacagcagtagtctaacttccccagag           
        tg   gt     ag    tcgtctcgtgagccccccgcttccgatacttcccga-atgacggttcgatgttcgatcaagtaccccagaa   gt     a
        ag                tcctcgcccacggcacgatagtcccccgcctcgacg-ggcgcggccctggcgctccaccccctgggcgcgg           
                                                                                                            

Query   ---> IIIHRLLSMFHPRPFVKTRFAPQGSVACIQAISTYYYTIAFR <---Intron---> IHAEFQLNEPPDFPFWFSPGQFTGYIVLSKDSSHVRE
           > /|||||||||||||||||||||||/|||/ ||| /|||/ || <   533nt    > |||||||/||||||||||||||||/|/||||//|||/
Target       VIIHRLLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFR                IHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHVRD
             gaaccccaatcccctgaactgccggggtcagaagtttagatc                acggtccagccgtcttttcgctagcaactaggacgcg
        g    tttagttgttacgcttacgtccagctcgtcctgataactttg   gt     ag    tacatatgaccatctgtccgatcgatttcaaccatga
             ccccgcgcgcctactggcctctggcgccgtcctcccccggc                gcccgcgctggcccccgccgtgccccccccaccccccc
                                                                                                            

Query   FKLFVPNKR <---Intron---> SLNVDMEWLYGASEGSNMEVDIGYLPQ <---Intron---> MELESTGPSVPSVIYDENGNVIDSRDPSGEPI
        |/||||| | <   1603nt   > |||||||||||||| |||||||||/|| <   154nt    > ||||/ |||||||| |//|/||||  |||| /
Target  FRLFVPNHR                SLNVDMEWLYGASESSNMEVDIGYIPQ                MELEAMGPSVPSVILDKDGSVIDSHLPSGESL
        tcctgcaca                tcaggagtctggagaaaagggagtacc                agcggagctgctgacgaggagagaccctggtc
        tgtttcaag   gt     ag    ctatatagtagcgaggatatatgatca   gt     ag    tatactgcctcctttaaaggttagatccgact
        cgccgccc                gtgtgcgggttgctacccgggccccacg                ggggcgccagcggcgtgtccgccccgcgggcg
                                                                                                            

Query   QFVFEEITWQQEIPWEEAAQKLEVAMYPFKK <---Intron---> VSYLPFTEAFERAKAEKKLVHSILLWGALDDQSCUG <---Intron---> S
        ||||||| ||||/ |||||//|||||||||| <   793nt    > ||||||||||/||||| ||||||||||||||||||| <   1468nt   > |
Target  QFVFEEIKWQQELSWEEAARRLEVAMYPFKK                VSYLPFTEAFDRAKAENKLVHSILLWGALDDQSCUG                S
        ctgtggaatccgcatggggcccgggatctaa                gtttctaggtgcgaggaacgctacctggcggctttg                t
        atttaatagaaatggaaccggtatctactaa   gt     ag    tcatctcactagcacaaattactttggctaaacgg    gt     ag   gc
        gtgtggcggggggcgggtcgcgggcgcccgg                cccggctgcccacgtgcgggcgcggggtgccgcca                ta
                                                                                         *                  

Query   GRTLRETVLESSPILALLNESFISSWSLVKELEELQ <---Intron---> TNRENEFYSKLADLHLEKYNFPVEMIICLPNGTV <---Intron---
        ||||||||||||||| ||||||||/||||||||||| <    84nt    >  |/||  / ||| ||||||/|||||/|||||||| <   1335nt   
Target  GRTLRETVLESSPILTLLNESFISTWSLVKELEELQ                NNQENPSHQKLAGLHLEKYSFPVEMMICLPNGTV              
        gcaccgagcgatcacaccagataaattcgagcggcc                aacgactccacggcccgatatcggaaatccagag              
        ggctgacttagccttcttaagttgcgcttaataata   gt     ag    aaaaaccaaatcgtataaagtctatttgtcagct   gt     ag  
        ggtcggtcgatgccccgccgcccccgcggggggggg                ccggcactgggtcgcgggcccaggggccgctctg              
                                                                                                            

Query   > IHHINANYFLDITSMKPEDVESSIFSFSANFDDPSTATYLQFLKEGLQRAKAYLQ-
        > /|||||||||||||||||/|||//||||/ |/|||||||/|||||||/|    || 
Target    VHHINANYFLDITSMKPEEVESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP
          gccaagatttgaataacggggaactatttatggctagatactcaggcccgcccccc
          taatacaattatcctacaatagattgtccctaacccccatattaagtgggtcttac
          cccctccccgccccggcgacgctccccacctacacgcccggcgggacgtcgcccgc
                                                                  
------- positions -------
Exon 1    106970753    106970876
Exon 2    106965438    106965571
Exon 3    106962017    106962226
Exon 4    106961657    106961781
Exon 5    106960986    106961123
Exon 6    106959301    106959382
Exon 7    106958958    106959146
Exon 8    106958059    106958164
Exon 9    106956478    106956590
Exon 10   106956292    106956393
Exon 11   106954789    106954956

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *