Command line: [exonerate -m p2g --showtargetgff -q seln2.fa.U_to_X -t gi|511782573|gb|CM001961.1|.fastasubseq]
Hostname: [luke]

C4 Alignment:
------------
         Query: SPP00000080_2.0 # Protein # Selenoprotein N (SelN) # Human (Homo sapiens) 
        Target: gi|511782573|gb|CM001961.1|:subseq(106904822,116036) Chlorocebus sabaeus isolate 1994-021 chromosome 20, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2465
   Query range: 10 -> 556
  Target range: 67814 -> 49966

    11 : ProProSerProGlyProAlaAlaGlnProProAlaProProArgArgArgAlaArgSer :    30
         |||! ! !!|||  !! ! !!|||! !||||||||||||||||||  !  ! !   !|||
         ProLeuProProProArgProAlaProProProAlaProProArgSerAlaProValSer
 67814 : CCCCTGCCACCGCCCCGCCCCGCCCCGCCCCCGGCCCCGCCCCGCTCCGCTCCNGTTAGC : 67757

    31 : LeuAlaLeuLeuGlyAlaLeuLeuAlaAlaAlaAlaAlaAlaAlaValArgValCysAla :    50
         ! !! !  !|||! !  !|||  !:!!  !:!!|||  !  !!.!:!!! !  !|||  !
         GlnAspGlyLeuAspLeuLeuThrSer***SerAlaArgLeuGlyLeuProLysCysTrp
 67756 : CAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGTCTCGGCCTCCCAAAGTGCTGG : 67697

    51 : ArgHisAlaGluAlaGlnAlaAlaAla{Ar}  >>>> Target Intron 1 >>>>   :    60
           !:!!  !   ! !! ! !!  ! !!{  }           1613 bp           
         AspTyrArgLeuGluProProArgPro{Al}-+                         +-
 67696 : GATTACAGGCTTGAGCCACCGCGCCCG{GC}ct.........................aa : 66054

    61 : {g}GlnGluLeuAlaLeuLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerLeu :    79
         {!}||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
         {a}GlnGluSerAlaLeuLysThrLeuGlyThrAspGlyLeuPheLeuPheSerSerLeu
 66053 : {G}CAGGAATCAGCGCTGAAGACCCTGGGGACAGATGGCCTTTTTCTCTTTTCCTCCTTG : 65997

    80 : AspThrAspGlyAspMetTyrIleSerProGluGluPheLysProIleAlaGluLysLeu :    99
         |||! !||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspIleAspGlyAspMetTyrIleSerProGluGluPheLysProIleAlaGluLysLeu
 65996 : GACATTGACGGGGATATGTACATCAGCCCTGAGGAGTTCAAACCCATTGCTGAGAAGCTA : 65937

   100 : Thr{G}  >>>> Target Intron 2 >>>>  {ly}SerThrProAlaAlaSerCys :   108
         |||{|}           5181 bp           {||}||||||||||||||||||! !
         Thr{G}++                         ++{ly}SerThrProAlaAlaSerTyr
 65936 : ACA{G}gt.........................ag{GG}TCAACTCCTGCGGCCAGCTAC : 60729

   109 : GluGluGluGluLeuProProAspProSerGluGluThrLeuThrIleGluAlaArgPhe :   128
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GluGluGluGluLeuProProAspProSerGluGluThrLeuThrIleGluAlaArgPhe
 60728 : GAGGAGGAGGAGTTGCCCCCTGACCCTAGCGAGGAGACACTCACCATAGAAGCCCGATTC : 60669

   129 : GlnProLeuLeuProGluThrMetThrLysSerLysAspGlyPheLeuGly  >>>> Ta :   146
         |||||||||||||||||||||||||||||||||||||||||||||||||||         
         GlnProLeuLeuProGluThrMetThrLysSerLysAspGlyPheLeuGly++       
 60668 : CAGCCTCTGCTCCCGGAGACCATGACCAAAAGCAAAGATGGCTTCCTAGGGgt....... : 60613

   147 : rget Intron 3 >>>>  ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrA :   159
           3211 bp           ||||||||||||||||||||||||||||||||||||||||
                           ++ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrA
 60612 : ..................agGTTTCCCGCCTTGCCCTGTCCGGCCTCCGAAACTGGACGG : 57365

   160 : laAlaAlaSerProSerAlaValPheAlaThrArgHisPheGlnProPheLeuProProP :   179
         ||||||||||||||||||||||||||:!!.!!||||||||||||||||||||||||||||
         laAlaAlaSerProSerAlaValPheSerAlaArgHisPheGlnProPheLeuProProP
 57364 : CCGCAGCCTCGCCAAGTGCAGTGTTTTCCGCCCGCCACTTCCAGCCCTTCCTTCCCCCGC : 57305

   180 : roGlyGlnGluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerMetPheThrG :   199
         ||||||||||||||||||||||||||||||||||||||||||||||||||:!!|||||||
         roGlyGlnGluLeuGlyGluProTrpTrpIleIleProSerGluLeuSerValPheThrG
 57304 : CAGGCCAGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTGTTCACTG : 57245

   200 : lyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu  >>>> Tar :   216
         ||||||||||||||||||||||||||||||||||||||||||||||||||          
         lyTyrLeuSerAsnAsnArgPheTyrProProProProLysGlyLysGlu++        
 57244 : GCTACCTATCCAACAACCGCTTCTATCCGCCGCCGCCCAAGGGCAAGGAGgt........ : 57192

   217 : get Intron 4 >>>>  ValIleIleHisArgLeuLeuSerMetPheHisProArgPr :   229
           235 bp           |||||||||||||||||||||||||||||||||||||||||
                          ++ValIleIleHisArgLeuLeuSerMetPheHisProArgPr
 57191 : .................agGTCATCATCCACCGGCTCCTGAGCATGTTCCACCCTCGACC : 56920

   230 : oPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAs :   249
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         oPheValLysThrArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAs
 56919 : CTTTGTGAAGACCCGCTTTGCCCCTCAGGGGGCCGTGGCCTGCCTGACTGCCATCAGTGA : 56860

   250 : pPheTyrTyrThrValMetPhe{Ar}  >>>> Target Intron 5 >>>>  {g}Il :   258
         ||||||||||||||||||||||{||}            533 bp           {|}||
         pPheTyrTyrThrValMetPhe{Ar}++                         ++{g}Il
 56859 : CTTCTACTACACCGTGATGTTC{CG}gt.........................ag{G}AT : 56300

   259 : eHisAlaGluPheGlnLeuSerGluProProAspPheProPheTrpPheSerProAlaGl :   278
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||!.!||
         eHisAlaGluPheGlnLeuSerGluProProAspPheProPheTrpPheSerProGlyGl
 56299 : CCACGCCGAGTTCCAGCTCAGTGAGCCGCCCGACTTCCCCTTCTGGTTCTCCCCGGGTCA : 56240

   279 : nPheThrGlyHisIleIleLeuSerLysAspAlaThrHisValArgAspPheArgLeuPh :   298
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         nPheThrGlyHisIleIleLeuSerLysAspAlaThrHisValArgAspPheArgLeuPh
 56239 : GTTCACCGGCCACATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTCTT : 56180

   299 : eValProAsnHis{Ar}  >>>> Target Intron 6 >>>>  {g}SerLeuAsnVa :   307
         |||||||||||||{||}           1603 bp           {|}|||||||||||
         eValProAsnHis{Ar}++                         ++{g}SerLeuAsnVa
 56179 : CGTGCCCAACCAC{AG}gt.........................ag{G}TCTCTGAATGT : 54550

   308 : lAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleGlyTy :   327
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         lAspMetGluTrpLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleGlyTy
 54549 : GGACATGGAGTGGCTTTATGGGGCCAGTGAAAGCAGCAACATGGAGGTGGACATCGGCTA : 54490

   328 : rIleProGln  >>>> Target Intron 7 >>>>  MetGluLeuGluAlaThrGly :   337
         ||||||||||            154 bp           |||||||||||||||! !|||
         rIleProGln++                         ++MetGluLeuGluAlaMetGly
 54489 : CATACCCCAGgt.........................agATGGAGCTGGAGGCCATGGGC : 54306

   338 : ProSerValProSerValIleLeuAspGluAspGlySerMetIleAspSerHisLeuPro :   357
         |||||||||||||||||||||||||||:!!|||||||||:!!||||||||||||||||||
         ProSerValProSerValIleLeuAspLysAspGlySerValIleAspSerHisLeuPro
 54305 : CCCTCAGTGCCCTCGGTGATCCTGGATAAGGATGGCAGCGTGATCGACAGCCACCTGCCC : 54246

   358 : SerGlyGluProLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrp :   377
         ||||||||| !!||||||||||||||||||||||||||||||||||||||||||||||||
         SerGlyGluSerLeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrp
 54245 : TCGGGGGAGTCCCTGCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGG : 54186

   378 : GluGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys  >>>> Targe :   394
         ||||||||||||||||||||||||||||||||||||||||||||||||            
         GluGluAlaAlaArgArgLeuGluValAlaMetTyrProPheLysLys++          
 54185 : GAGGAGGCTGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGgt.......... : 54133

   395 : t Intron 8 >>>>  ValSerTyrLeuProPheThrGluAlaPheAspArgAlaLysA :   408
         793 bp           |||||||||||||||||||||||||||||||||||||||||||
                        ++ValSerTyrLeuProPheThrGluAlaPheAspArgAlaLysA
 54132 : ...............agGTCTCCTACTTGCCGTTCACTGAGGCCTTCGACCGAGCCAAGG : 53300

   409 : laGluAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCysU :   428
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
         laGluAsnLysLeuValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCys*
 53299 : CTGAGAACAAGCTGGTGCACTCGATCCTGCTGTGGGGGGCTCTGGACGACCAGTCCTGCT : 53240

   429 : nk{G}  >>>> Target Intron 9 >>>>  {ly}SerGlyArgThrLeuArgGluT :   437
           {|}           1468 bp           {||}||||||||||||||||||||||
         **{G}++                         ++{ly}SerGlyArgThrLeuArgGluT
 53239 : GA{G}gt.........................ag{GT}TCAGGGCGGACTCTCCGGGAGA : 51745

   438 : hrValLeuGluSerSerProIleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpS :   457
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         hrValLeuGluSerSerProIleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpS
 51744 : CTGTCCTGGAAAGTTCGCCCATCCTCACCCTGCTCAACGAGAGCTTCATCAGCACCTGGT : 51685

   458 : erLeuValLysGluLeuGluGluLeuGln  >>>> Target Intron 10 >>>>  A :   467
         |||||||||||||||||||||||||||||             84 bp            |
         erLeuValLysGluLeuGluGluLeuGln++                          ++A
 51684 : CCCTGGTGAAGGAGCTGGAGGAGCTGCAGgt..........................agA : 51571

   468 : snAsnGlnGluAsnSerSerHisGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerP :   487
         |||||||||||||| !!|||||||||||||||||||||||||||||||||||||||||||
         snAsnGlnGluAsnProSerHisGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerP
 51570 : ACAACCAGGAGAACCCATCCCATCAGAAGCTGGCTGGCCTGCACCTGGAGAAGTACAGCT : 51511

   488 : heProValGluMetMetIleCysLeuProAsnGlyThrVal  >>>> Target Intro :   501
         |||||||||||||||||||||||||||||||||||||||||            1335 bp
         heProValGluMetMetIleCysLeuProAsnGlyThrVal++                 
 51510 : TCCCAGTGGAGATGATGATCTGCCTGCCCAATGGCACTGTGgt................. : 51467

   502 : n 11 >>>>  ValHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysP :   517
                    ||||||||||||||||||||||||||||||||||||||||||:!!||||
                  ++ValHisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerMetLysP
 51466 : .........agGTCCACCACATCAATGCCAACTACTTCTTGGACATCACCTCCATGAAGC : 50086

   518 : roGluGluIleGluSerAsnLeuPheSerPheSerSerThrPheGluAspProSerThrA :   537
         ||||||||:!!|||||||||||||||||||||||||||||||||||||||||||||||||
         roGluGluValGluSerAsnLeuPheSerPheSerSerThrPheGluAspProSerThrA
 50085 : CCGAGGAAGTCGAGAGCAATCTCTTCAGCTTCTCATCCACCTTTGAAGACCCATCCACGG : 50026

   538 : laThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro :   556
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         laThrTyrMetGlnPheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro
 50025 : CCACCTACATGCAGTTCCTGAAGGAGGGACTCCGGCGTGGCCTGCCCCTCCTCCAGCCC : 49967

vulgar: SPP00000080_2.0 10 556 . gi|511782573|gb|CM001961.1|:subseq(106904822,116036) 67814 49966 - 2465 M 49 147 S 0 2 5 0 2 I 0 1609 3 0 2 S 1 1 M 40 120 S 0 1 5 0 2 I 0 5177 3 0 2 S 1 2 M 44 132 5 0 2 I 0 3207 3 0 2 M 70 210 5 0 2 I 0 231 3 0 2 M 41 123 S 0 2 5 0 2 I 0 529 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1599 3 0 2 S 1 1 M 27 81 5 0 2 I 0 150 3 0 2 M 63 189 5 0 2 I 0 789 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1464 3 0 2 S 1 2 M 37 111 5 0 2 I 0 80 3 0 2 M 34 102 5 0 2 I 0 1331 3 0 2 M 56 168
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2013-11-05
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	gene	49967	67814	2465	-	.	gene_id 1 ; sequence SPP00000080_2.0 ; gene_orientation +
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	67666	67814	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	67666	67814	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	67664	67665	.	-	.	intron_id 1 ; splice_site "CT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	66053	67665	.	-	.	intron_id 1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	66053	66054	.	-	.	intron_id 0 ; splice_site "AA"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	65931	66052	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	65931	66052	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	65929	65930	.	-	.	intron_id 2 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	60750	65930	.	-	.	intron_id 2
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	60750	60751	.	-	.	intron_id 1 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	60616	60749	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	60616	60749	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	60614	60615	.	-	.	intron_id 3 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	57405	60615	.	-	.	intron_id 3
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	57405	57406	.	-	.	intron_id 2 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	57195	57404	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	57195	57404	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	57193	57194	.	-	.	intron_id 4 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	56960	57194	.	-	.	intron_id 4
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	56960	56961	.	-	.	intron_id 3 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	56835	56959	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	56835	56959	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	56833	56834	.	-	.	intron_id 5 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	56302	56834	.	-	.	intron_id 5
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	56302	56303	.	-	.	intron_id 4 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	56164	56301	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	56164	56301	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	56162	56163	.	-	.	intron_id 6 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	54561	56163	.	-	.	intron_id 6
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	54561	54562	.	-	.	intron_id 5 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	54479	54560	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	54479	54560	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	54477	54478	.	-	.	intron_id 7 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	54325	54478	.	-	.	intron_id 7
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	54325	54326	.	-	.	intron_id 6 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	54136	54324	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	54136	54324	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	54134	54135	.	-	.	intron_id 8 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	53343	54135	.	-	.	intron_id 8
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	53343	53344	.	-	.	intron_id 7 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	53237	53342	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	53237	53342	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	53235	53236	.	-	.	intron_id 9 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	51769	53236	.	-	.	intron_id 9
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	51769	51770	.	-	.	intron_id 8 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	51656	51768	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	51656	51768	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	51654	51655	.	-	.	intron_id 10 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	51572	51655	.	-	.	intron_id 10
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	51572	51573	.	-	.	intron_id 9 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	51470	51571	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	51470	51571	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice5	51468	51469	.	-	.	intron_id 11 ; splice_site "GT"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	intron	50135	51469	.	-	.	intron_id 11
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	splice3	50135	50136	.	-	.	intron_id 10 ; splice_site "AG"
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	cds	49967	50134	.	-	.	
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	exon	49967	50134	.	-	.	insertions 0 ; deletions 0
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	exonerate:protein2genome:local	similarity	49967	67814	2465	-	.	alignment_id 1 ; Query SPP00000080_2.0 ; Align 67815 11 147 ; Align 66052 61 120 ; Align 60748 102 132 ; Align 57405 146 210 ; Align 56960 216 123 ; Align 56301 258 135 ; Align 54560 304 81 ; Align 54325 331 189 ; Align 53343 394 105 ; Align 51767 430 111 ; Align 51572 467 102 ; Align 50135 501 168
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis