genewise output
Score 1019.42 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000080_2.0   60 RQELALKTLGTDGLFLFSSLDTDGDMYISPEEFKPIAEKLT         
                     +QE ALKTLGTDGLFLFSSLD DGDMYISPEEFKPIAEKLT         
                     KQESALKTLGTDGLFLFSSLDIDGDMYISPEEFKPIAEKLT         
gi|511782573|g-66054 acgtgcaacgaggctcttttgagggataacggtacaggaca         
                     aaacctactgcagttttcctatagatatgcaatactcaatc         
                     ggaagggcggatcttctccgctcgtgccctggcacttggaa         


SPP00000080_2.0  101                           STPAASCEEEELPPDPSEETLTI 
                                               STPAAS EEEELPPDPSEETLTI 
                               G:G[ggg]        STPAASYEEEELPPDPSEETLTI 
gi|511782573|g-65931 GGTACCAG  Intron 1   TAGGGtacggatggggtccgcaggacaa 
                      <1-----[65930:60750]-1>  cccccgaaaaatccacgaactct 
                                               attgcccgggggctctcggacca 


SPP00000080_2.0  125 EARFQPLLPETMTKSKDGFLG                       VSRLA 
                     EARFQPLLPETMTKSKDGFLG                       VSRLA 
                     EARFQPLLPETMTKSKDGFLG                       VSRLA 
gi|511782573|g-60678 ggctcccccgaaaaaaggtcgGTGAGTA  Intron 2   CAGgtccg 
                     acgtacttcactcagaagttg<0-----[60615:57405]-0>tcgtc 
                     acacgtgcggcgcacatccag                       tcctc 


SPP00000080_2.0  151 LSGLRNWTAAASPSAVFATRHFQPFLPPPGQELGEPWWIIPSELSMFTG 
                     LSGLRNWTAAASPSAVF+ RHFQPFLPPPGQELGEPWWIIPSELS+FTG 
                     LSGLRNWTAAASPSAVFSARHFQPFLPPPGQELGEPWWIIPSELSVFTG 
gi|511782573|g-57389 ctgccatagggtcaggttgcctcctccccgcgcggcttaacagcagtag 
                     tcgtgagccccccgcttccgatacttcccgaatgacggttcgatgttcg 
                     gcccacggcacgatagtcccccgcctcgacgggcgcggccctggcgctc 


SPP00000080_2.0  200 YLSNNRFYPPPPKGKE                       VIIHRLLSMF 
                     YLSNNRFYPPPPKGKE                       VIIHRLLSMF 
                     YLSNNRFYPPPPKGKE                       VIIHRLLSMF 
gi|511782573|g-57242 tctaacttccccagagGTGAGGA  Intron 3   CAGgaaccccaat 
                     atcaagtaccccagaa<0-----[57194:56960]-0>tttagttgtt 
                     caccccctgggcgcgg                       ccccgcgcgc 


SPP00000080_2.0  226 HPRPFVKTRFAPQGAVACLTAISDFYYTVMF                   
                     HPRPFVKTRFAPQGAVACLTAISDFYYTVMF                   
                     HPRPFVKTRFAPQGAVACLTAISDFYYTVMF                   
gi|511782573|g-56929 cccctgaactgccggggtcagaagtttagat                   
                     acgcttacgtccagctcgtcctgataacttt                   
                     ctactggcctctggcgccgtcctcccccggc                   


SPP00000080_2.0  257                           IHAEFQLSEPPDFPFWFSPAQFT 
                                               IHAEFQLSEPPDFPFWFSP QFT 
                                R:R[cgg]       IHAEFQLSEPPDFPFWFSPGQFT 
gi|511782573|g-56836 CGGTGAGTG  Intron 4   CAGGacggtccagccgtcttttcgcta 
                       <2-----[56834:56302]-2> tacatatgaccatctgtccgatc 
                                               cccgcgctggcccccgccgtgcc 


SPP00000080_2.0  281 GHIILSKDATHVRDFRLFVPNH                          S 
                     GHIILSKDATHVRDFRLFVPNH                          S 
                     GHIILSKDATHVRDFRLFVPNH           R:R[agg]       S 
gi|511782573|g-56231 gcaactaggacgcgtcctgcacAGGTGGGAG  Intron 5   CAGGt 
                     gatttcaaccatgatgtttcaa  <2-----[56163:54561]-2> c 
                     ccccccaccccccccgccgccc                          t 


SPP00000080_2.0  305 LNVDMEWLYGASESSNMEVDIGYIPQ                        
                     LNVDMEWLYGASESSNMEVDIGYIPQ                        
                     LNVDMEWLYGASESSNMEVDIGYIPQ                        
gi|511782573|g-54556 caggagtctggagaaaagggagtaccGTGAGCG  Intron 6   CAG 
                     tatatagtagcgaggatatatgatca<0-----[54478:54325]-0> 
                     gtgcgggttgctacccgggccccacg                        


SPP00000080_2.0  331 MELEATGPSVPSVILDEDGSMIDSHLPSGEPLQFVFEEIKWQQELSWEE 
                     MELEA GPSVPSVILD+DGS+IDSHLPSGE LQFVFEEIKWQQELSWEE 
                     MELEAMGPSVPSVILDKDGSVIDSHLPSGESLQFVFEEIKWQQELSWEE 
gi|511782573|g-54324 agcggagctgctgacgaggagagaccctggtcctgtggaatccgcatgg 
                     tatactgcctcctttaaaggttagatccgactatttaatagaaatggaa 
                     ggggcgccagcggcgtgtccgccccgcgggcggtgtggcggggggcggg 


SPP00000080_2.0  380 AARRLEVAMYPFKK                       VSYLPFTEAFDR 
                     AARRLEVAMYPFKK                       VSYLPFTEAFDR 
                     AARRLEVAMYPFKK                       VSYLPFTEAFDR 
gi|511782573|g-54177 ggcccgggatctaaGTGAGGC  Intron 7   CAGgtttctaggtgc 
                     ccggtatctactaa<0-----[54135:53343]-0>tcatctcactag 
                     tcgcgggcgcccgg                       cccggctgccca 


SPP00000080_2.0  406 AKAENKLVHSILLWGALDDQSCX                           
                     AKAENKLVHSILLWGALDDQSCX                           
                     AKAENKLVHSILLWGALDDQSCX          G:G[ggt]         
gi|511782573|g-53306 gaggaacgctacctggcggctttGGTGAGGG  Intron 8   CAGGT 
                     cacaaattactttggctaaacgg <1-----[53236:51769]-1>   
                     cgtgcgggcgcggggtgccgcca                           


SPP00000080_2.0  430 SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ             
                     SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ             
                     SGRTLRETVLESSPILTLLNESFISTWSLVKELEELQ             
gi|511782573|g-51766 tgcaccgagcgatcacaccagataaattcgagcggcc             
                     cggctgacttagccttcttaagttgcgcttaataata             
                     aggtcggtcgatgccccgccgcccccgcggggggggg             


SPP00000080_2.0  467                        NNQENSSHQKLAGLHLEKYSFPVEMM 
                                            NNQEN SHQKLAGLHLEKYSFPVEMM 
                                            NNQENPSHQKLAGLHLEKYSFPVEMM 
gi|511782573|g-51655 GTGAGCC  Intron 9   CAGaacgactccacggcccgatatcggaa 
                     <0-----[51655:51572]-0>aaaaaccaaatcgtataaagtctatt 
                                            ccggcactgggtcgcgggcccagggg 


SPP00000080_2.0  493 ICLPNGTV                       VHHINANYFLDITSVKPE 
                     ICLPNGTV                       VHHINANYFLDITS+KPE 
                     ICLPNGTV                       VHHINANYFLDITSMKPE 
gi|511782573|g-51493 atccagagGTAGGCA  Intron 10  CAGgccaagatttgaataacg 
                     tgtcagct<0-----[51469:50135]-0>taatacaattatcctaca 
                     ccgctctg                       cccctccccgccccggcg 


SPP00000080_2.0  519 EIESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP            
                     E+ESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP            
                     EVESNLFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP            
gi|511782573|g-50080 gggaactatttatggctagatactcaggcccgcccccc            
                     atagattgtccctaacccccatattaagtgggtcttac            
                     acgctccccacctacacgcccggcgggacgtcgcccgc            


//
Making a G in phase 1 intron
Making a R in phase 2 intron
Making a R in phase 2 intron
Making a G in phase 1 intron
>gi|511782573|gb|CM001961.1|:subseq(106904822,116036).pep
KQESALKTLGTDGLFLFSSLDIDGDMYISPEEFKPIAEKLTGSTPAASYEEEELPPDPSE
ETLTIEARFQPLLPETMTKSKDGFLGVSRLALSGLRNWTAAASPSAVFSARHFQPFLPPP
GQELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQG
AVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFV
PNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEAMGPSVPSVILDKDGSVIDSHLPSG
ESLQFVFEEIKWQQELSWEEAARRLEVAMYPFKKVSYLPFTEAFDRAKAENKLVHSILLW
GALDDQSCXGSGRTLRETVLESSPILTLLNESFISTWSLVKELEELQNNQENPSHQKLAG
LHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSMKPEEVESNLFSFSSTFEDPSTATY
MQFLKEGLRRGLPLLQP
//
>gi|511782573|gb|CM001961.1|:subseq(106904822,116036).[66054:49965].sp
AAGCAGGAATCAGCGCTGAAGACCCTGGGGACAGATGGCCTTTTTCTCTTTTCCTCCTTG
GACATTGACGGGGATATGTACATCAGCCCTGAGGAGTTCAAACCCATTGCTGAGAAGCTA
ACAGGGTCAACTCCTGCGGCCAGCTACGAGGAGGAGGAGTTGCCCCCTGACCCTAGCGAG
GAGACACTCACCATAGAAGCCCGATTCCAGCCTCTGCTCCCGGAGACCATGACCAAAAGC
AAAGATGGCTTCCTAGGGGTTTCCCGCCTTGCCCTGTCCGGCCTCCGAAACTGGACGGCC
GCAGCCTCGCCAAGTGCAGTGTTTTCCGCCCGCCACTTCCAGCCCTTCCTTCCCCCGCCA
GGCCAGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTGTTCACTGGC
TACCTATCCAACAACCGCTTCTATCCGCCGCCGCCCAAGGGCAAGGAGGTCATCATCCAC
CGGCTCCTGAGCATGTTCCACCCTCGACCCTTTGTGAAGACCCGCTTTGCCCCTCAGGGG
GCCGTGGCCTGCCTGACTGCCATCAGTGACTTCTACTACACCGTGATGTTCCGGATCCAC
GCCGAGTTCCAGCTCAGTGAGCCGCCCGACTTCCCCTTCTGGTTCTCCCCGGGTCAGTTC
ACCGGCCACATCATCCTCTCCAAAGACGCCACCCACGTCCGCGACTTCCGGCTCTTCGTG
CCCAACCACAGGTCTCTGAATGTGGACATGGAGTGGCTTTATGGGGCCAGTGAAAGCAGC
AACATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCCATGGGCCCCTCA
GTGCCCTCGGTGATCCTGGATAAGGATGGCAGCGTGATCGACAGCCACCTGCCCTCGGGG
GAGTCCCTGCAGTTTGTGTTTGAGGAGATCAAGTGGCAGCAGGAGCTGAGCTGGGAGGAG
GCTGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGGTCTCCTACTTGCCGTTC
ACTGAGGCCTTCGACCGAGCCAAGGCTGAGAACAAGCTGGTGCACTCGATCCTGCTGTGG
GGGGCTCTGGACGACCAGTCCTGCTGAGGTTCAGGGCGGACTCTCCGGGAGACTGTCCTG
GAAAGTTCGCCCATCCTCACCCTGCTCAACGAGAGCTTCATCAGCACCTGGTCCCTGGTG
AAGGAGCTGGAGGAGCTGCAGAACAACCAGGAGAACCCATCCCATCAGAAGCTGGCTGGC
CTGCACCTGGAGAAGTACAGCTTCCCAGTGGAGATGATGATCTGCCTGCCCAATGGCACT
GTGGTCCACCACATCAATGCCAACTACTTCTTGGACATCACCTCCATGAAGCCCGAGGAA
GTCGAGAGCAATCTCTTCAGCTTCTCATCCACCTTTGAAGACCCATCCACGGCCACCTAC
ATGCAGTTCCTGAAGGAGGGACTCCGGCGTGGCCTGCCCCTCCTCCAGCCC
//
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	match	66054	49967	1019.42	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	66054	65931	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	65930	60750	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	60749	60616	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	60615	57405	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	57404	57195	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	57194	56960	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	56959	56835	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	56834	56302	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	56301	56164	0.00	-	1	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	56163	54561	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	54560	54479	0.00	-	1	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	54478	54325	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	54324	54136	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	54135	53343	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	53342	53237	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	53236	51769	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	51768	51656	0.00	-	2	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	51655	51572	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	51571	51470	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	intron	51469	50135	0.00	-	.	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
gi|511782573|gb|CM001961.1|:subseq(106904822,116036)	GeneWise	cds	50134	49967	0.00	-	0	gi|511782573|gb|CM001961.1|:subseq(106904822,116036)-genewise-prediction-1
//