Output_id:  SelM.2.selenocysteine
----------  ---------------------
-Species        Chlorocebus sabaeus                          -Taxid 60711
-Target         /home/U73970/luke/Selenoprofiles/selenoprofiles_3_installation/genome_linked/genome.fa
-Chromosome (-) gi|511782574|gb|CM001960.1|
-Program        genewise
-Query name     gi|169234774|ref|NP_001108486.1| selenoprotein M precursor [Canis lupus familiaris]
-Query range    1-142      length:142   coverage: 1.0
-Profile range  1-309      length:309   coverage: 1.0    sec_position: [168]
-ASI:           0.3849     (ignoring gaps: 0.4545)
-AWSIc:         0.6994     Z-score: 1.766
-AWSIw:         0.6911     Z-score: 1.382
-State          kept

------- alignment -------
Query   MRLPLPPPPLLLLLAALAA---AVTTFRPDWNRLHGLARARVE <---Intron---> TCGGUQLNRLKE <---Intron---> VKAFVTQDIPLY 
        | | |||  |||||||| |   | | /||||||| || ||||| <   1422nt   > |||||||||||| <   216nt    > |||||||||| | 
Target  MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE                TCGGUQLNRLKE                VKAFVTQDIPFY 
        aacctcccgcccccggcggcgaggagtccgtaccagcacgcgg                atggtccaccag                gagtgacgactt 
        tgtttcctctttttccttccccccccagcagagtggtcgcgta   gt     ag    cggggatagtaa   gt     ag    tacttcaatcta 
        gccggtggggggtcggtgcacacctccggcgttgccgcccgag                ctgaaggtcagg                ggtcccgctac  
                                                                       *                                    

Query   <---Intron---> HNLVMKHLPGADPELVLLGHHYEELE <---Intron---> RIPLSEMTREEINELVQELGFYRKAAPDEAVPPEYLRAPARPA
        <   342nt    > |||||||||||||||||||  ||||| <    79nt    > ||||||||||||| ||||||||||||||  |||||/ ||||| 
Target                 HNLVMKHLPGADPELVLLGRRYEELE                RIPLSEMTREEINALVQELGFYRKAAPDAQVPPEYVWAPARPP
                       cacgaacccgggcgcgccgcctggcg                caccagaacggaagcgcgcgttcaggcggcgccgtgtgcgacc
          gt     ag    aatttaatcgcacattttgggaaata   gt     ag    gtctgatcgaatacttaatgtagacccacatccaatgcccgcc
                      tccgggacctgcctgcgggccccgagg                cagctagccagccgggggctcccgggccgggccgcgggctgcg
                                                                                                            

Query   EGAPDRADL
        |   | |||
Target  EETSDHADL
        ggatgcggc
        aaccaacat
        gatgccccg
                 
------- positions -------
Exon 1    13998866     13998994
Exon 2    13997408     13997443
Exon 3    13997157     13997191
Exon 4    13996736     13996814
Exon 5    13996501     13996656

-------- features -------
None
--------- 3' seq --------
Total sequence length available downstream >= 6000
Sequence until first stop codon: 
TAG
 *